Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02585 ATGGGGGGTTGCACTTCGAAGCCGCAGAAACACAACCCATATGCCGTTAGAGAAACGGAAGGTGACCCAACGCAAATCCCGAAGACCCCGTTAAGTCCCGTCGCCGATGGTCATGGCCGGAAAGATAAAGATGACGTCATCGCCGGAAAAAAGTCGCCGTTTTTTCCGTTTTACAGTCCGAGCCCGGCTCGTTTCCTGAAGAAGTCTCCTTCGACGCCGAGCCGGAGTACGAGCTCGACGCCGAGGAGGTTTTTCCGGCGAGCTTTTCCTCCGCCTTCGCCGGCGAAGCATATAAGGGCTGCGCTGGCTCGGAGACAAGGGAAGAAGGAAACTGCGGCGATACCGGAAGATTCGGAGGAGGGTGCAGGGGATTTGGACAAGAGATTTGGATTTTCGAAGGATTTTACTAGTAAGTTGGAGGTTGGAGAAGAAGTGGGTAGAGGGCATTTTGGGTATACTTGTTCTGCTAAGTTTAAGAAGGGTGAGCATAAGGGTCAACAAGTAGCTGTGAAAGTCATTCCTAAAGCAAAGATGACAACAGCAATTGCAATTGAAGATGTAAGAAGGGAGGTGAAAATATTGCGAGCTTTGAACGGGCACAGCAATTTGGTACAATTCTATGATTCATTTGAAGACCAAGAAAATGTCTACATTGTCATGGAGTTATGTGAAGGGGGAGAGCTATTAGATATGATACTATCAAGAGGAGGGAAATACTCAGAAGATGATGCAAAGGCTGTCATGGTACAAATACTAAATGTTGTTGCATTTTGTCATCTTCAGGGTGTGGTGCATCGAGATCTTAAGCCTGAGAATTTCTTATACACTTCAAAAGACGAAAGTTCCGAGTTAAAAGCTATAGACTTTGGATTATCAGATTTTGTTAGACCAGATGAGAGGCTTAATGACATTGTTGGAAGTGCTTATTATGTGGCTCCTGAAGTTCTTCACAGATCTTACAGCACAGAAGCTGACGTGTGGAGTATAGGCTTTGAAGAAGCTCCTTGGCCAACCTTATCTTCAGAAGCAATAGATTTTGTCAAACGCCTACTGAATAAGGACCCACGGAAACGAATATCTGCTGCTCAGGCACTGAGTCATCCTTGGATACGTAATTACAATGATGTAAAAGTTCCACTTGATATTTTAATATTCAAGCTCATGAAGACTTATATGAGATCATCATCTTTGCGCAAAGCTGCCTTAAGGGCCTTGTCAAAGACATTAACTGCGGATGAACTCTATTATCTGAGGGAACAGTTTGCACTGTTGGAACCGAGCAAAAATGGAAGCATATCCTTGGAGAACATTAACAAGGCCTTGAAGAAATATGCAACTGATGCCATGAAAGAGTCTCGTATCACTGATTTTCTTTCCTTGCTGACTTCATTACAATATAGAAGGATGGATTTTGAAGAATTTTGTGCCGCTACATTAAGTGTGCATCAACTCGAAGCTCTTGATCGTTGGGAACAACATGCCCGCTGTGCATATGAACTTTTTGAGAAAGATGGAAACAGAGCTATTGTCATTGAAGAACTTGCTTCAGAACTTGGACTTGGTCCATCTATCCCTGTTCATGTTGTTCTTCATGACTGGATACGCCACACCGATGGGAAGTTAAGCTTTCTCGGGTTTGTCAAATTATTGCATGGTGTATCTAGCCGAAACATTGCAAAGGTCCAGTAA 1689 0.4381 MGGCTSKPQKHNPYAVRETEGDPTQIPKTPLSPVADGHGRKDKDDVIAGKKSPFFPFYSPSPARFLKKSPSTPSRSTSSTPRRFFRRAFPPPSPAKHIRAALARRQGKKETAAIPEDSEEGAGDLDKRFGFSKDFTSKLEVGEEVGRGHFGYTCSAKFKKGEHKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALNGHSNLVQFYDSFEDQENVYIVMELCEGGELLDMILSRGGKYSEDDAKAVMVQILNVVAFCHLQGVVHRDLKPENFLYTSKDESSELKAIDFGLSDFVRPDERLNDIVGSAYYVAPEVLHRSYSTEADVWSIGFEEAPWPTLSSEAIDFVKRLLNKDPRKRISAAQALSHPWIRNYNDVKVPLDILIFKLMKTYMRSSSLRKAALRALSKTLTADELYYLREQFALLEPSKNGSISLENINKALKKYATDAMKESRITDFLSLLTSLQYRRMDFEEFCAATLSVHQLEALDRWEQHARCAYELFEKDGNRAIVIEELASELGLGPSIPVHVVLHDWIRHTDGKLSFLGFVKLLHGVSSRNIAKVQ 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02585 562 Gene3D Phosphorylase Kinase; domain 1 141 228 - -
Vifa6g02585 562 CDD STKc_CAMK 140 369 - -
Vifa6g02585 562 SUPERFAMILY Protein kinase-like (PK-like) 135 406 IPR011009 -
Vifa6g02585 562 FunFam CDPK-related kinase 3 131 303 - -
Vifa6g02585 562 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Vifa6g02585 562 Gene3D Transferase(Phosphotransferase) domain 1 332 381 - -
Vifa6g02585 562 SUPERFAMILY EF-hand 401 551 IPR011992 -
Vifa6g02585 562 Gene3D - 388 479 - -
Vifa6g02585 562 FunFam CDPK-related kinase 1 406 479 - -
Vifa6g02585 562 FunFam CDPK-related kinase 1 132 227 - -
Vifa6g02585 562 MobiDBLite consensus disorder prediction 65 83 - -
Vifa6g02585 562 SMART serkin_6 139 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02585 562 MobiDBLite consensus disorder prediction 35 49 - -
Vifa6g02585 562 Pfam Protein kinase domain 140 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02585 562 ProSitePatterns Protein kinases ATP-binding region signature. 145 171 IPR017441 GO:0005524
Vifa6g02585 562 PANTHER SERINE/THREONINE-PROTEIN KINASE 331 537 - -
Vifa6g02585 562 MobiDBLite consensus disorder prediction 1 125 - -
Vifa6g02585 562 Gene3D - 395 549 - -
Vifa6g02585 562 ProSiteProfiles Protein kinase domain profile. 139 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02585 562 MobiDBLite consensus disorder prediction 104 125 - -
Vifa6g02585 562 Gene3D Transferase(Phosphotransferase) domain 1 229 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02585 Vifa-Chr6 889781869 889785661 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02585 1 558 EF-hand Containing Proteins AT3G50530 68.132 0.0 844
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifa6g02585 Pkinase 5.8e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02585 - K00924 cam:101492337 973