Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02581 ATGGGCTCTGTTTCTTCAGAACTGAGTTTAGATTTAACACCCACTTTCGTTCCCAAAACCATCGCTAGTTTTCTCTACAATCTATCCACAATTCATACTCCCTCTCATAAACTCTCTAAACTCCACGATTTTCTCTCCAAATTGGAACAAGAACTCCATAAGATCCACGCCTTCAAACGCGAACTGCCTCTTTCCATGCTCCTCTTAAACGACGCAATCTTAATTTTGAAGGAGGAATCGGAGAAATGCAGACGTGAGAGTTGTGTGCCGGTTTTGGAAGAGTTTATTCCGTTGAAGAAAGAGATTGATCATAGTGAGGAAAATCATGATATTGATAGAGATAAGAATAATGAATGCTGCAGAGATAAAAAGAATTGGATGAGTTCTGTTCAGCTATGGAACACCACAACCACCACCACCAATACTACTAATGATAATAATATTAATAATAATGCCTCTCAACCTGATCATAAAGTTTGTAGCAATCAAAATAAATTAGAAACCAAGAAAAGGGAAGAGGAAGAAAAATCTGTGACTATAGCTGAAGATCGTTTTCAATCTTGTAGTAGTAATAGGAATGGAGGAAGTGCTTTTATGCCATTTTCAACTTATTCTTCTGTTCCTGTGACGAAGATTAAATTGGCAGCAGCTAAAGATGAGAAAGATGAAACTGGTTTGAATAGGCTGTGTTTTTTGACGCCTGGAGTGAAAAGTTTGAGGGAAGGATTTGATTCGAGGGGATCGAGGAGTAGTTCTAGCAGAGCTGTTTCTGTTTCGTCTTCTCCTCCTACTGTGCAGACGAGTTTGAGGAGTGCGCCAGTTCAGCCGCAGCAGATTGCTAGGAAACAGAGGAGGTGCTGGTCGCCGGAGTTGCATAGGAGATTTGTTAATGCGTTGCAGAAGCTTGGAGGTTCTCAAGCAACGCCAAAGCAAATCAGAGAACTGATGCAAGTTGATGGCCTGACTAATGATGAAGTGAAGAGCCATTTGCAAAAATACCGTCTTCATACACGGAGAGTTCCAGCTGCAAACGGTAATGAGTCTGTTGTAGTTCTTGGAGGTTTATGGATGTCTCAAGAACCATACAATGGATCTTCCAAAGGTAGCAGTTCGGCGTCTGGTTCTCCACAAAGTCCTCTTCATTTAGCTACAGGATCCCGGGGAGGGACATCCCGAACTGAAGGTGATAGCATGGAAGACGACGATGAAGATGCAAAATCAGAGAGTTATAGCTGGAAAAGTCATATTCACAGACATGGACAAGTTGGTGTATAG 1275 0.4173 MGSVSSELSLDLTPTFVPKTIASFLYNLSTIHTPSHKLSKLHDFLSKLEQELHKIHAFKRELPLSMLLLNDAILILKEESEKCRRESCVPVLEEFIPLKKEIDHSEENHDIDRDKNNECCRDKKNWMSSVQLWNTTTTTTNTTNDNNINNNASQPDHKVCSNQNKLETKKREEEEKSVTIAEDRFQSCSSNRNGGSAFMPFSTYSSVPVTKIKLAAAKDEKDETGLNRLCFLTPGVKSLREGFDSRGSRSSSSRAVSVSSSPPTVQTSLRSAPVQPQQIARKQRRCWSPELHRRFVNALQKLGGSQATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPAANGNESVVVLGGLWMSQEPYNGSSKGSSSASGSPQSPLHLATGSRGGTSRTEGDSMEDDDEDAKSESYSWKSHIHRHGQVGV 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02581 424 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 279 338 IPR017930 -
Vifa6g02581 424 SUPERFAMILY Homeodomain-like 280 339 IPR009057 -
Vifa6g02581 424 MobiDBLite consensus disorder prediction 245 273 - -
Vifa6g02581 424 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 9 414 IPR044787 GO:0003700|GO:0006355
Vifa6g02581 424 MobiDBLite consensus disorder prediction 241 273 - -
Vifa6g02581 424 MobiDBLite consensus disorder prediction 362 392 - -
Vifa6g02581 424 MobiDBLite consensus disorder prediction 362 424 - -
Vifa6g02581 424 FunFam Myb family transcription factor 281 338 - -
Vifa6g02581 424 NCBIfam myb-like DNA-binding domain, SHAQKYF class 282 336 IPR006447 GO:0003677
Vifa6g02581 424 Pfam Myb-like DNA-binding domain 284 334 IPR001005 -
Vifa6g02581 424 Gene3D - 279 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02581 Vifa-Chr6 888145212 888147618 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02581 5 360 G2-like Transcription Factor Family AT2G03500 40.270 6.19e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa6g02581 Myb_DNA-binding 2.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02581 - - mtr:25493035 573.548