Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02565 ATGTCTACAATGTTGTTAACCATACTCATCATCATTCTCTTGTTTTCATCACTTGCTTGTTCTCACCACCACCACAACCACCGTCGTATCCTCCACCAACCACTTTATCCGTCTATCTCTCTTCCACCAACACAACCACCGTCTTCTTCACCTCAAACCCAACCCCAACCCCAACCCCAACAACAACCTAAGCTTCCATTTTCTTCCATTTCTTCTTCTTATCCTCCTCCACTAAAGCCTTTCTTTCCTACTTACCAATCTCCACCACTCCCTCCTTCTCCTCCTGTTCTCGCCACTTTCCCTGCTAACATCTCCTCCTTACTTCTCCCACACCCCCACCCTCAAACCCACACCCACCGCACCGCTGCTGCCCTCGTTATCTCCCTCTGTCTTTTCTCCATCACCATCCTCACCGTATCTGCCATCTTCGCCTTCCACCGTCGCCATCACAACCATACATCTTCCTTCACCACCGCAAACGACGACAGTGCTTCCAGGTCAGACAGTCTCCGGTTATTCCCGCCCAACACCGCCACTTCAGACGCCGTCGACGGGAAACCACCTTCCTCTGCCTCTGAGGTATTCCACCTCGGTACAGTAGCAAGTTCATACGACGCAACAGTTACCGCAGAATCAACCTCTGCCAATGACGGTTTCTCTCCGCCGTACCGCCAACTCACAGACTCCCCGGAGCTTCATCCCTTACCTAAACTACCACGTTACCATGTGAGAACACGGACCACTGAACTGAACAAAGAAAAACAAGAAGAGAAAGAAAGAGAAGATGAAGAGTTTTATTCTCCGGCAGATTCTCCTTCTGGAAACAAACAACAGAGTCCTCCGCCTTCTTCTTCTTCACCGGTTGTTGCTGTTGCTGTTGCTGCAACAAGCTCTCGTTCATTCAACGTTTTTCATTTAGATAAATTTGGTAGCAGAAGCTTCACTTCAAGAACACCTTCTTACCCTCTTTCTTACTCACTCTCTCGTTCTCCTTCTCTCAATCTTAGTCCCATCCATAGCGTCAAATCCTTACCTCCTCACAACCCTGCATCTCCTTCTTTTTCTTCTTCCTCTTGTTCTCCAATCCGGTTTGAAGATTTTCGTACAAATTGGGATGATAAGAACTCTCAGGCAACCAAACTGTCTCCTCCTGCTCCTCCGCCTATGCCTCGGAGTTTTTGGGAGACTCCGGCGGTGGCTTCTGAAAATGTTTATGTTAATGATGAAACTCGAAAGCCGAAGTTGAAGGCTTTACATTGGGATAAAGTGAAGGCAAGCTCAGATAGGGCCATGGTTTGGGATCAGTTGAGACCAAGTTCTTTTCAGTTGAATGAGGACATGATTGAGACACTCTTTATGATAAATAATTCCAATGGAAATCCTGCTTTGGCTTCTAAAGATAAAGCGCGAAATCAAATAATCCATTCTTCTCCTGTGCCGCCGGAGAATAGGGTGCTTGATCCTAAGAAGTCGCAGAATATCGCCATTTTGCTCCGGGCACTCAATGTAACTATTGATGAAGTTTGTGAAGCCCTCAGGGAAGGAACTTGTGATACATTGGGAACAGAACTTCTAGAAAGTTTATTAAAGATGGCTCCAACCAAAGAGGAAGAAACTAAGCTGAAGGAGTTTAAAGATGATTCACCCTTCAAGCTAGGCCCAGCTGAGAAATTTCTTAAAGTCATGCTTGATATACCTTTTGCATTCAAGAGAGTAGATGCTATGCTCTACATTGCTAATTTTGATTCAGAATTAGAATATCTTAAGAAATCCTTTCATACTCTGGAGGTGGCTTGTGAGGAATTGAAGAATAGCAGAATGTTTATGAAGATACTTGAAGCGGTGCTGAGAACTGGAAATCGAATGAATGTTGGCACTGATCGTGGCGACGCACAAGCATTCAAACTGGACACACTTTTGAAGTTAGTTGATATTAAGGGAACTGACAGAAAGACTACTCTTTTGCATTTCGTTGTACATGAGATTGTCAGAACCGAGGGTTCGGGTTCTCATGCCGACTCTGTCAACGACCATCAATATACACTTCAAGATGAGGTTGACTCCAGGAAGCTTGGACTGCAAGTTGTGTCGGGTTTGAGCGGGGAGCTCGCCAATGTTAAAAAGGCAGCTGTTATGGATTCAGACACGCTGAGTAGTGATGTTGCTAAACTTGCCAAAGGAATCGAAAAGGTTGTGCGAGTTGTAAAATTGAATGAAGAGTCACCTTTGAAAGAAGCTAACCAAAAGTTTTCCGAGGCAGTGAAAGGCTTCTTGGAGAGGGGGGAAACAGAAATTTCAAGAATCACGGCACAAGAGAAATATGCTCTTGCTTTAGTGAAGGAGATAACTGAGTATTTCCATGGTAATTTGGAAAAGGAAGAAGCTCATCCGTTTAGGATATTTACGATTGTAAAGGATTTCCTTTCAATACTAGACAGTGTGTGCAGGCAAGTTGGGAAAGCAAATGAGAGGACTTTGGTCGGTTCACATCAATATGTAACGCCTGCAATCACTACACTGCCACCAATTTTCCTTGAGTTTAGTGCTATGCAGCCATCTAATTCCTCAGAATCTGATTAA 2580 0.4469 MSTMLLTILIIILLFSSLACSHHHHNHRRILHQPLYPSISLPPTQPPSSSPQTQPQPQPQQQPKLPFSSISSSYPPPLKPFFPTYQSPPLPPSPPVLATFPANISSLLLPHPHPQTHTHRTAAALVISLCLFSITILTVSAIFAFHRRHHNHTSSFTTANDDSASRSDSLRLFPPNTATSDAVDGKPPSSASEVFHLGTVASSYDATVTAESTSANDGFSPPYRQLTDSPELHPLPKLPRYHVRTRTTELNKEKQEEKEREDEEFYSPADSPSGNKQQSPPPSSSSPVVAVAVAATSSRSFNVFHLDKFGSRSFTSRTPSYPLSYSLSRSPSLNLSPIHSVKSLPPHNPASPSFSSSSCSPIRFEDFRTNWDDKNSQATKLSPPAPPPMPRSFWETPAVASENVYVNDETRKPKLKALHWDKVKASSDRAMVWDQLRPSSFQLNEDMIETLFMINNSNGNPALASKDKARNQIIHSSPVPPENRVLDPKKSQNIAILLRALNVTIDEVCEALREGTCDTLGTELLESLLKMAPTKEEETKLKEFKDDSPFKLGPAEKFLKVMLDIPFAFKRVDAMLYIANFDSELEYLKKSFHTLEVACEELKNSRMFMKILEAVLRTGNRMNVGTDRGDAQAFKLDTLLKLVDIKGTDRKTTLLHFVVHEIVRTEGSGSHADSVNDHQYTLQDEVDSRKLGLQVVSGLSGELANVKKAAVMDSDTLSSDVAKLAKGIEKVVRVVKLNEESPLKEANQKFSEAVKGFLERGETEISRITAQEKYALALVKEITEYFHGNLEKEEAHPFRIFTIVKDFLSILDSVCRQVGKANERTLVGSHQYVTPAITTLPPIFLEFSAMQPSNSSESD 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02565 859 MobiDBLite consensus disorder prediction 153 191 - -
Vifa6g02565 859 MobiDBLite consensus disorder prediction 156 186 - -
Vifa6g02565 859 MobiDBLite consensus disorder prediction 41 62 - -
Vifa6g02565 859 Gene3D Formin, FH2 domain 412 827 IPR042201 -
Vifa6g02565 859 ProSiteProfiles Formin homology-2 (FH2) domain profile. 405 837 IPR015425 -
Vifa6g02565 859 SMART it6_source 405 826 IPR015425 -
Vifa6g02565 859 MobiDBLite consensus disorder prediction 235 267 - -
Vifa6g02565 859 MobiDBLite consensus disorder prediction 41 69 - -
Vifa6g02565 859 PANTHER FORMIN-RELATED 12 850 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vifa6g02565 859 Pfam Formin Homology 2 Domain 409 811 IPR015425 -
Vifa6g02565 859 Coils Coil 244 264 - -
Vifa6g02565 859 SUPERFAMILY Formin homology 2 domain (FH2 domain) 383 824 - -
Vifa6g02565 859 MobiDBLite consensus disorder prediction 270 288 - -
Vifa6g02565 859 MobiDBLite consensus disorder prediction 212 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02565 Vifa-Chr6 882003132 882006099 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02565 373 841 FH2 protein (formin) Gene Family AT3G25500 62.500 0.0 574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02565 - - vun:114175163 906.36