Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02560 ATGGCATTGGATCACCACTCCCCGTCTCTTCAGATATTAGTTCGGCGGCCGGAAGAATGCTCACTATGGACTGGACCTCCGTTCCCAAACGGTCAACCTAATGTCAAGCTTGATAAAGTTAATTGCTTGAATGCAAAATTCAGTGATGATGGGTCTTTGTTTATGGTGGTGAAATCTAATTCTGTTGTTAGTATTTATGATTGTGAGAGTGCTAATGAGATTAGGTCTTTTCAAGTTCCTAATCTTGTTGCTGCTAGTTTGTCTCCTCGGGGAACTTATTTGCAAACCTTTCAAAAACCTGCGCCGCAAGAAAAGAATGTGACGTTATGGAAAATAGAGACGGGTGATTCTATTTATCAACTCTCTCAGAAGAGTATGACAAGAGTCAATTGGCCTGCAATTCAGTTCAGCTCCGATGAAGCTACTGCATGCCGCTTGGCAACTAATGAGTTGCAGTTTTTCGATACTGGGGATTTTTCTAAAGGATTTGTTTATCGGTTAAGAGTTCCAGGAGTTGCTTCTGCCGAGCTTTCTAGTTCACCTGCTTCTCATGTAGCTGCATTTGTTCCCGAATCCAAGGGGGTTCCTGCTAGTGTACAGATATATGCTTGTGGAAATGCTTCCCAAAGTCAGCCCGTGGCTCGACGGAGTTTTTTCCGATGTTCTACTACCCAGCTTAAATGGAATCATGGTTCAACTGGACTTCTAGCCATGGCACAGTCAGATGTTGATAAAACCAATCAGAGTTACTATGGAGAATCGAAGTTATACTACATAACAACAGATGGGAAGTATGAAGGATTAGTGCCTCTTCGGAAAGAGGGGCCTGTTCATGAAGCTCAGTGGTCATATTCAGGCTTAGAGTTTGCTGTTGTGTATGGGTTTATGCCTGCTAAAGCAACTTTGTTTGACAAGAACTGCAATCCTATACTGGAGCTTGGAACTGGTCCTTACAACACTATTCGATGGAACCCGAAAGGGAAATTTTTATGTTTGGCTGGCTTCGGTAACTTGCCTGGCGATATGGTATTTTGGGATTACGTAGAAAAGAAACAGCTTGCATCAACCAAGGCTGAATGGTCTGTGACTAGTGAATGGTCTCCGGATGGGTGCTATTTCATGACAGCGACTACAGCTCCAAGGCTTCAAGTTGACAATGGGATCAAGATTTTTCACTACAATGGGTCTTTGTACTTCAAGAAGATGTTTGACAAATTGTACCAGGCTGATTGGAAACCAGAGTCACCAAGTAAGTTTGGTGATATCACTGAACTAATCAAGTCACTGGACTCGATCAAACTTGAAGATAAAAAACCATCAGGTCAAGGACCAAAACAAACCCAGGCTTCTACAAAAGCTTCTTCTGCCAACCCAACTGCTCAAAAACCTGCCGCATATCGTCCTCCACATGCTAAGACTGCAGCTAGTATTAAGGCAGAGCTTTTAGGAGAGAGCTCCGCAGAAACACTGAGCAAGAATGCTTTAAAAAACAAGAAAAAGAGGGAGAAACAGAAGGAGAAAAAGGCTGCTGCAGATGCCAGTTCTTGA 1548 0.4302 MALDHHSPSLQILVRRPEECSLWTGPPFPNGQPNVKLDKVNCLNAKFSDDGSLFMVVKSNSVVSIYDCESANEIRSFQVPNLVAASLSPRGTYLQTFQKPAPQEKNVTLWKIETGDSIYQLSQKSMTRVNWPAIQFSSDEATACRLATNELQFFDTGDFSKGFVYRLRVPGVASAELSSSPASHVAAFVPESKGVPASVQIYACGNASQSQPVARRSFFRCSTTQLKWNHGSTGLLAMAQSDVDKTNQSYYGESKLYYITTDGKYEGLVPLRKEGPVHEAQWSYSGLEFAVVYGFMPAKATLFDKNCNPILELGTGPYNTIRWNPKGKFLCLAGFGNLPGDMVFWDYVEKKQLASTKAEWSVTSEWSPDGCYFMTATTAPRLQVDNGIKIFHYNGSLYFKKMFDKLYQADWKPESPSKFGDITELIKSLDSIKLEDKKPSGQGPKQTQASTKASSANPTAQKPAAYRPPHAKTAASIKAELLGESSAETLSKNALKNKKKREKQKEKKAAADASS 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02560 515 SUPERFAMILY DPP6 N-terminal domain-like 42 394 - -
Vifa6g02560 515 Pfam Eukaryotic translation initiation factor eIF2A 216 409 IPR013979 -
Vifa6g02560 515 MobiDBLite consensus disorder prediction 441 461 - -
Vifa6g02560 515 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2A 10 511 IPR011387 GO:0003743|GO:0006413
Vifa6g02560 515 FunFam Eukaryotic translation initiation factor 2A 198 421 - -
Vifa6g02560 515 Coils Coil 492 512 - -
Vifa6g02560 515 PIRSF Transl_init_eIF2A 5 515 IPR011387 GO:0003743|GO:0006413
Vifa6g02560 515 MobiDBLite consensus disorder prediction 434 475 - -
Vifa6g02560 515 MobiDBLite consensus disorder prediction 489 515 - -
Vifa6g02560 515 Gene3D - 33 396 IPR015943 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02560 130 417 Eukaryotic Initiation Factors Gene Family AT5G27640 26.159 9.24e-21 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02560 K15026 - gmx:100811589 868.996