Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02559 ATGATAGCTAGCTCCTTCTGCAATGCTGATTCTATGTTTTCGAGTGAAGAGGGGATAGATGTTAGAAAGATGATGGAGCATAAAAGGAGCATTTGCTCTGTTGATCAAAGCAATTATAATTCCATTGCATCTAAAAAGCAAAAGCCTGATTTATCGATCACCACTAAGGATAGGAAGGAAAAGATTGGCGAACGAATTGTTGCTCTTCAACAGCTTGTTTCACCATATGGAAAGACAGATACATCTTCTGTTCTAAAGGAGGCGATGGAATACATAGGGTTCCTTCATAAACAAGTTAAGCTGCTTAGTGCTCCTTACCTCGAAACTACACCAGCAATCCAGATGCAGGATACAGAGTCATGCAGCCTTAGGAGTAGAGGGTTATGTCTTTTTCCTGTCTCATTTACTATTGGAGTTGCTGAGGGCAATGGTGCAGACATTTGGGCTCCGATCAAGACCACTTCGCCTGATTCTGAGAAAGATGTTTCTCAAATTCAGTGA 501 0.4132 MIASSFCNADSMFSSEEGIDVRKMMEHKRSICSVDQSNYNSIASKKQKPDLSITTKDRKEKIGERIVALQQLVSPYGKTDTSSVLKEAMEYIGFLHKQVKLLSAPYLETTPAIQMQDTESCSLRSRGLCLFPVSFTIGVAEGNGADIWAPIKTTSPDSEKDVSQIQ 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02559 166 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 42 136 - -
Vifa6g02559 166 CDD bHLH_AtbHLH_like 52 103 IPR045239 -
Vifa6g02559 166 Gene3D - 43 117 IPR036638 GO:0046983
Vifa6g02559 166 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Vifa6g02559 166 FunFam Transcription factor bHLH113 family 45 121 - -
Vifa6g02559 166 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 54 113 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02559 Vifa-Chr6 878190013 878192446 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02559 24 153 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05710 51.974 2.45e-50 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02559 - - gmx:100809747 278.87