Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02553 ATGGCCACCTCTGCTATCCAACAATCAGCATTCACTGGTAAGACTGATTTGAGGCAGGGAAATGAATTCATCAGGAAAGTTGGTAACCTTGGCCAAAGTCGCTTCACCACGCGTCGTACCGTGAAGAGTGCTCCTGAAAGCATTCGGTATGGTCCTGACCGTCCCAAGTACTTGGGTCCATTCTCTGAACAAATTCCATCATACCTTACTGCTGACCCTGAAACATTTGCAAGGAACCGTGAGCTTGAAGTAATTCACAGCAGATGGGCTATGCTTGGTGCGTTGGGATGTACCTTCCCTGAACTCCTTGAAAAGAATGGTGTTAAATTCAGCGAGGCAGTGTGGGTCAAGGAACTCAAGAACGGTCGATTGGCTATATTCTCCAAGTTTGGTTTCTTTGTTCAAGCCATTGCTACTGGCAAAGGCCATATTCAGAACCTGTATGACCATGTTGCTGACCCTGTCGCAAACAACGCATGGGCTTTCGCTACCAACTTTGTCCCCAGACGATAA 513 0.4737 MATSAIQQSAFTGKTDLRQGNEFIRKVGNLGQSRFTTRRTVKSAPESIRYGPDRPKYLGPFSEQIPSYLTADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFSEAVWVKELKNGRLAIFSKFGFFVQAIATGKGHIQNLYDHVADPVANNAWAFATNFVPRR 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02553 170 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 116 169 IPR001344 GO:0009765|GO:0016020
Vifa6g02553 170 Gene3D Chlorophyll a/b binding protein domain 117 163 - -
Vifa6g02553 170 SUPERFAMILY Chlorophyll a-b binding protein 48 167 - -
Vifa6g02553 170 Pfam Chlorophyll A-B binding protein 66 112 IPR022796 -
Vifa6g02553 170 Gene3D Chlorophyll a/b binding protein domain 56 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02553 Vifa-Chr6 877178832 877179473 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02553 96 170 Chloroplast and Mitochondria Gene Families AT2G05070 66.667 2.01e-26 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02553 K08913 - gmx:100815789 194.512