Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02552 ATGGCCACCTCTGCTATCCAACAATCAGCATTCACTGGTAAGACTGATTTGAGGCAGGGAAATGAATTCATCAGGAAAGTTGGTAACCTTGGCCAAAGTCGCTTCACCACGCGTCGTACCGTGAAGAGTGCTCCTGAAAGCATTCGGTATGGTCCTGACCGTCCCAAGTACTTGGGTCCATTCTCTGAACAAATTCCATCATACCTTACTGCAGATGGGCTATGCTTGGTGCGTTGGGATGTACCTTCCCTGAACTCCTTGAAAAGAATGGTGTTAAATTCAGCGAGGCAGTGTGGTTCAAAGCCGGTCAAGGAACTCAAGAACGGTCGATTGGCTATATTCTCCAAGTTTGGTTTCTTTGTTCAAGCCATTGCTACTGGCAAAGGCCATATTCAGAACCTGTATGACCATGTTGCTGACCCTGTCGCAAACAACGCATGGGCTTTCGCTACCAACTTTGTCCCCAGACGATAA 474 0.4768 MATSAIQQSAFTGKTDLRQGNEFIRKVGNLGQSRFTTRRTVKSAPESIRYGPDRPKYLGPFSEQIPSYLTADGLCLVRWDVPSLNSLKRMVLNSARQCGSKPVKELKNGRLAIFSKFGFFVQAIATGKGHIQNLYDHVADPVANNAWAFATNFVPRR 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02552 157 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 103 156 IPR001344 GO:0009765|GO:0016020
Vifa6g02552 157 Gene3D Chlorophyll a/b binding protein domain 84 150 - -
Vifa6g02552 157 SUPERFAMILY Chlorophyll a-b binding protein 48 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02552 Vifa-Chr6 877167968 877168608 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02552 1 86 Chloroplast and Mitochondria Gene Families AT2G05070 60.465 3.20e-29 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02552 K08913 - csv:101212963 117.857