Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02548 ATGGGAAAGAAAGGGAGTTGGTTTTCAGCAATCAAGAGGGTTTTCACACACCACTCCAAGGGCAAGCAGGATTCAGATAACAAAAGTTCAAAAGAGAAGAAGAAAGGTCGGGGTAAACTAAAACATGGAGAGACCAATTCTTTCATCCCGCTCTTCAGAGAGCCCAGCAGCATTGAGAAAATATTTGGTGACTTTGAAAGAGAGCAACAAGTGCTTGCAATTAGGCCTCCCACACCTCCTGCGCGACCCAAAACACCGCCTTTTGTTCCTCCTAGAGTTGCTTCTCCTAGGCCTCCTTCTCCAAAGCCCCCTTCTCCGAAGGCTCCTTCTCCACGAGTCACCTCTCCCAAAGCAGCATCTTCCCGGAATGTTCATCACAACAGACCCGAGCCAACTTTACGGAACCAGCATGCGTCGGCTACTAAGATTCAGGCTCTTTACAGAGGTTATACGGCGAGGAGGAGTTTTAGAGCTCTTAAGGGTTTGGTAAGGCTTCAAGGAGTGGTAAGAGGACAGAATGTGAAGAGGCAGACAGTTAGTGCCATGAAACACATGCAGCTGTTAGTGCGAGTTCAATCCCAGATTCAATCTAGAAGAATCCAGATGCTGGAAAACCAGGCACGATATAACGCTGAGTTCAAGAACGATAAGGACGCTGCAAGTACCTTTGGAAAACTAACTTTAGGACATGGTTCTGAGGCAGGTAACAACGAAGATTGGGATGATAGCTTACTGACAAAAGAGGAAGTAGATGCAAGGCTGCAAAGGAAAGTGGAAGCAATCATCAAAAGAGAGAGAACAATGGCATTTGCATATTCTCATCAGTTGTGGAAGGCCACGCCAAAATCAACTCAAACACCGGTGACAGACATGCGATCAAGTGGATTCCCATGGTGGTGGAACTGGTTGGAAAGACAGCTACCTGCAACATCAAACCCACAAGAAAAACAAGTCCTAAAAAATTTTCAACTAACTCCGCCGAGACCATATTCAGAACAAAAGACAAGTCCAAGACCTGGCTCAAGCACTCAAAGGCAACAGCATCATCCTTTTGCCTTTGATAACATGGATACATCCACTCCAAAATCGACAAAATCAACGATATTTCCATCTTCAAAACCATCTAGAACTCCTCCATTTAGAACTCCACAAGGAAACAGTTCAAGCATGATGTCAAAATATTCAAGGTCAAAAGCAGTAGGGTCCAGTTCACCTTTCGACGTGCCAATGAAAGACGACGACAGTCTCACAAGCTGTCCACCGTTTTCGGTTCCAAACTACATGGCTTCAACTGCTTCTGCTAAGGCGAAAGTACGCGCTAGCAGTAATCCAAGAGAAAGATTCGGCGGTGGTAGTAGCGGTTGTGTAACTCCAACTCCAAGCAATGATTCAAAAAGAAGAGTCTCATTTCCTTTATCACAAGGAATAGGATCATTCAAATGGAACAAAGGGTCAGTGTTCTCTAGCAATAAGGATCCTCATGGTTCACACAGGACACCAGATAAATATCAGGAATCTATAGGAAATGTGAGTGTGGATTCGACGGTATCATTGCCTGCAAGGGTCGGAAGAAAGCCTTTTACAAGATTTGTGTGA 1596 0.4492 MGKKGSWFSAIKRVFTHHSKGKQDSDNKSSKEKKKGRGKLKHGETNSFIPLFREPSSIEKIFGDFEREQQVLAIRPPTPPARPKTPPFVPPRVASPRPPSPKPPSPKAPSPRVTSPKAASSRNVHHNRPEPTLRNQHASATKIQALYRGYTARRSFRALKGLVRLQGVVRGQNVKRQTVSAMKHMQLLVRVQSQIQSRRIQMLENQARYNAEFKNDKDAASTFGKLTLGHGSEAGNNEDWDDSLLTKEEVDARLQRKVEAIIKRERTMAFAYSHQLWKATPKSTQTPVTDMRSSGFPWWWNWLERQLPATSNPQEKQVLKNFQLTPPRPYSEQKTSPRPGSSTQRQQHHPFAFDNMDTSTPKSTKSTIFPSSKPSRTPPFRTPQGNSSSMMSKYSRSKAVGSSSPFDVPMKDDDSLTSCPPFSVPNYMASTASAKAKVRASSNPRERFGGGSSGCVTPTPSNDSKRRVSFPLSQGIGSFKWNKGSVFSSNKDPHGSHRTPDKYQESIGNVSVDSTVSLPARVGRKPFTRFV 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02548 531 ProSiteProfiles IQ motif profile. 136 164 IPR000048 GO:0005515
Vifa6g02548 531 MobiDBLite consensus disorder prediction 17 33 - -
Vifa6g02548 531 MobiDBLite consensus disorder prediction 439 467 - -
Vifa6g02548 531 MobiDBLite consensus disorder prediction 76 111 - -
Vifa6g02548 531 MobiDBLite consensus disorder prediction 484 508 - -
Vifa6g02548 531 MobiDBLite consensus disorder prediction 1 53 - -
Vifa6g02548 531 MobiDBLite consensus disorder prediction 69 138 - -
Vifa6g02548 531 Gene3D - 134 188 - -
Vifa6g02548 531 Pfam IQ calmodulin-binding motif 137 157 IPR000048 GO:0005515
Vifa6g02548 531 Pfam Protein of unknown function (DUF4005) 397 475 IPR025064 -
Vifa6g02548 531 MobiDBLite consensus disorder prediction 322 412 - -
Vifa6g02548 531 SMART iq_5 135 157 IPR000048 GO:0005515
Vifa6g02548 531 MobiDBLite consensus disorder prediction 322 402 - -
Vifa6g02548 531 PANTHER IQ-DOMAIN 5-RELATED 1 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02548 Vifa-Chr6 875833313 875835488 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02548 1 530 IQD Protein Family AT3G59690 51.910 4.41e-156 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02548 - - gmx:100807777 736.873