Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02547 ATGGGAAAGAAAGGGAGTTGGTTTTCAGCAATCAAGAGGGTTTTCACACACCACTCCAAGGGCAAGGATTCAGATAACAAAAGTTCAAAAGAGAAGAAGAAAGGTCGGGGTAAACTAAAACATGGAGAGACCAATTCTTTCATCCCGCTCTTCAGAGAGCCCAGCAGCATTGAGAAAATATTTGGTGACTTTGAAAGAGAGCAACAAGTGCTTGCAATTAGGCCTCCCACACCTCCTGCGCGACCCAAAACACCGCCTTTTGTTCCTCCTAGAGTTGCTTCTCCTAGGCCTCCTTCTCCAAAGCCCCCTTCTCCGAAGGCTCCTTCTCCACGAGTCACCTCTCCCAAAGCAGCATCTTCCCGGAATGTTCATCACAACAGACCCGAGCCAACTTTACGGAACCAGCATGCGTCGGCTACTAAGATTCAGGCTCTTTACAGAGGTTATACGGCGAGGAGGAGTTTTAGAGCTCTTAAGGGTTTGGTAAGGCTTCAAGGAGTGGTAAGAGGACAGAATGTGAAGAGGCAGACAGTTAGTGCCATGAAACACATGCAGCTGTTAGTGCGAGTTCAATCCCAGATTCAATCTAGAAGAATCCAGATGCTGGAAAACCAGGCACGATATAACGCTGAGTTCAAGAACGATAAGGACGCTGCAAGTACCTTTGGAAAACTAACTTTAGGACATGGTTCTGAGGCAGGTAACAACGAAGATTGGGATGATAGCTTACTGACAAAAGAGGAAGTAGATGCAAGGCTGCAAAGGAAAGTGGAAGCAATCATCAAAAGAGAGAGAACAATGGCATTTGCATATTCTCATCAGTTGTGGAAGGCCACGCCAAAATCAACTCAAACACCGGTGACAGACATGCGATCAAGTGGATTCCCATGGTGGTGGAACTGGTTGGAAAGACAGCTACCTGCAACATCAAACCCACAAGAAAAACAAGTCCTAAAAAATTTTCAACTAACTCCGCCGAGACCATATTCAGAACAAAAGACAAGTCCAAGACCTGGCTCAAGCACTCAAAGGCAACAGCATCATCCTTTTGCCTTTGATAACATGGATACATCCACTCCAAAATCGACAAAATCAACGATATTTCCATCTTCAAAACCATCTAGAACTCCTCCATTTAGAACTCCACAAGGAAACAGTTCAAGCATGATGTCAAAATATTCAAGGTCAAAAGCAGTAGGGTCCAGTTCACCTTTCGACGTGCCAATGAAAGACGACGACAGTCTCACAAGCTGTCCACCGTTTTCGGTTCCAAACTACATGGCTTCAACTGCTTCTGCTAAGGCGAAAGTACGCGCTAGCAGTAATCCAAGAGAAAGATTCGGCGGTGGTAGTAGCGGTTGTGTAACTCCAACTCCAAGCAATGATTCAAAAAGAAGAGTCTCATTTCCTTTATCACAAGGAATAGGATCATTCAAATGGAACAAAGGGTCAGTGTTCTCTAGCAATAAGGATCCTCATGGTTCACACAGGACACCAGATAAATATCAGGAATCTATAGGAAATGTGAGTGTGGATTCGACGGTATCATTGCCTGCAAGGGTCGGAAGAAAGCCTTTTACAAGATTTGTGTGA 1593 0.4488 MGKKGSWFSAIKRVFTHHSKGKDSDNKSSKEKKKGRGKLKHGETNSFIPLFREPSSIEKIFGDFEREQQVLAIRPPTPPARPKTPPFVPPRVASPRPPSPKPPSPKAPSPRVTSPKAASSRNVHHNRPEPTLRNQHASATKIQALYRGYTARRSFRALKGLVRLQGVVRGQNVKRQTVSAMKHMQLLVRVQSQIQSRRIQMLENQARYNAEFKNDKDAASTFGKLTLGHGSEAGNNEDWDDSLLTKEEVDARLQRKVEAIIKRERTMAFAYSHQLWKATPKSTQTPVTDMRSSGFPWWWNWLERQLPATSNPQEKQVLKNFQLTPPRPYSEQKTSPRPGSSTQRQQHHPFAFDNMDTSTPKSTKSTIFPSSKPSRTPPFRTPQGNSSSMMSKYSRSKAVGSSSPFDVPMKDDDSLTSCPPFSVPNYMASTASAKAKVRASSNPRERFGGGSSGCVTPTPSNDSKRRVSFPLSQGIGSFKWNKGSVFSSNKDPHGSHRTPDKYQESIGNVSVDSTVSLPARVGRKPFTRFV 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02547 530 MobiDBLite consensus disorder prediction 75 110 - -
Vifa6g02547 530 Pfam IQ calmodulin-binding motif 136 156 IPR000048 GO:0005515
Vifa6g02547 530 MobiDBLite consensus disorder prediction 68 137 - -
Vifa6g02547 530 SMART iq_5 134 156 IPR000048 GO:0005515
Vifa6g02547 530 MobiDBLite consensus disorder prediction 1 51 - -
Vifa6g02547 530 PANTHER IQ-DOMAIN 5-RELATED 1 472 - -
Vifa6g02547 530 MobiDBLite consensus disorder prediction 321 411 - -
Vifa6g02547 530 Pfam Protein of unknown function (DUF4005) 396 474 IPR025064 -
Vifa6g02547 530 MobiDBLite consensus disorder prediction 321 401 - -
Vifa6g02547 530 MobiDBLite consensus disorder prediction 483 507 - -
Vifa6g02547 530 Gene3D - 133 187 - -
Vifa6g02547 530 ProSiteProfiles IQ motif profile. 135 163 IPR000048 GO:0005515
Vifa6g02547 530 MobiDBLite consensus disorder prediction 16 32 - -
Vifa6g02547 530 MobiDBLite consensus disorder prediction 439 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02547 Vifa-Chr6 875833313 875835488 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02547 1 529 IQD Protein Family AT3G59690 51.389 4.49e-154 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02547 - - gmx:100807777 726.087