Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02543 ATGCTTCCAAGGCAACGTGTTTATCGCTACCCTTCTGGACGCAACAATATTCAAGATGCCCTTGTGCAAAACATAGCTGGTGGAATGATGTCCTATGGAATGGGAGGTCTGCCACTCCGTGATGTTCTACCACATATGTCAATTCATGCTTTGGCTACCGCACTTGCAAATGCTCCTTCTGAACAGCAGAGGACGATGCTTAGGGAGGCTTTGTATCCGCTGGTAGATCAGCTAGAATATGATTTATCAGCCAAGGTTATTGGCATGCTTTTGGAGATGGACCAGCCTGAAGTATTACATCTGATTGAATCACCTGATGCTCTCAAGGCTAAAGTTGTTGAAGCCATGGATGTGCTGAGAAATGTTGCTCAACAAGGTAATAGCCCGGCGGATCAACTAGATTCACTATCTCTCAACGATAATCTGAAAGATTTGGAGGACATTGAAGAAACTGCGGCGCAAGAGGAAGAAGGGAAAAGCGTTTCAAAAGTTGAGAGTTACGGTCACGATGACTCTTCGTATCCTGTTGGGTCGCGTCCTGGAGAACATTACCCAAATACAGATACCAGGAGATAG 576 0.4549 MLPRQRVYRYPSGRNNIQDALVQNIAGGMMSYGMGGLPLRDVLPHMSIHALATALANAPSEQQRTMLREALYPLVDQLEYDLSAKVIGMLLEMDQPEVLHLIESPDALKAKVVEAMDVLRNVAQQGNSPADQLDSLSLNDNLKDLEDIEETAAQEEEGKSVSKVESYGHDDSSYPVGSRPGEHYPNTDTRR 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02543 191 Gene3D - 44 126 - -
Vifa6g02543 191 MobiDBLite consensus disorder prediction 144 191 - -
Vifa6g02543 191 Pfam Poly-adenylate binding protein, unique domain 55 119 IPR002004 GO:0003723
Vifa6g02543 191 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 47 124 IPR002004 GO:0003723
Vifa6g02543 191 MobiDBLite consensus disorder prediction 144 166 - -
Vifa6g02543 191 FunFam Polyadenylate-binding protein 43 125 - -
Vifa6g02543 191 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UBR5 57 165 - -
Vifa6g02543 191 SUPERFAMILY PABC (PABP) domain 1 128 IPR036053 GO:0003723
Vifa6g02543 191 SMART poly_2 59 122 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02543 Vifa-Chr6 873697793 873702519 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02543 1 142 Eukaryotic Initiation Factors Gene Family AT2G23350 55.769 4.93e-40 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02543 K13126 - gmx:100784442 198.749