Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02542 ATGCTTCCAAGGCAACGTGTTTATCGCTACCCTTCTGGACGCAACAATATTCAAGATGCCCTTGTGCAAAACATAGCTGGTGGAATGATGTCCTATGGAATGGGAGGTCTGCCACTCCGTGATGTTCTACCACATATGTCAATTCATGCTTTGGCTACCGCACTTGCAAATGCTCCTTCTGAACAGCAGAGGACGATGCTTAGGGAGGCTTTGTATCCGCTGGTAGATCAGCTAGAATATGATTTATCAGCCAAGGTTATTGGCATGCTTTTGGAGATGGACCAGCCTGAAGTATTACATCTGATTGAATCACCTGATGCTCTCAAGGCTAAAGTTGTTGAAGCCATGGATGTGCTGAGAAATGTTGCTCAACAAGGTAATAGCCCGGCGGATCAACTAGATTCACTATCTCTCAACGATAATCTGAAAGATTTGGAGGACATTGAAGAAACTGCGGCGCAAGAGGAAGAAGGGAAAAGCGTTTCAAAAGTTGAGTGCTGA 501 0.4511 MLPRQRVYRYPSGRNNIQDALVQNIAGGMMSYGMGGLPLRDVLPHMSIHALATALANAPSEQQRTMLREALYPLVDQLEYDLSAKVIGMLLEMDQPEVLHLIESPDALKAKVVEAMDVLRNVAQQGNSPADQLDSLSLNDNLKDLEDIEETAAQEEEGKSVSKVEC 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02542 166 Gene3D - 44 126 - -
Vifa6g02542 166 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 47 124 IPR002004 GO:0003723
Vifa6g02542 166 FunFam Polyadenylate-binding protein 43 125 - -
Vifa6g02542 166 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UBR5 57 153 - -
Vifa6g02542 166 SUPERFAMILY PABC (PABP) domain 1 128 IPR036053 GO:0003723
Vifa6g02542 166 Pfam Poly-adenylate binding protein, unique domain 55 119 IPR002004 GO:0003723
Vifa6g02542 166 SMART poly_2 59 122 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02542 Vifa-Chr6 873697793 873698949 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02542 1 142 Eukaryotic Initiation Factors Gene Family AT2G23350 55.769 9.86e-41 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02542 K13126 - gmx:100784442 198.749