Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02541 ATGCTTCCAAGGCAACGTGTTTATCGCTACCCTTCTGGACGCAACATTATTCAAGATGCCCCTGTGCAAAACATAGCTGGTGGAATGATGTCCTATGAAATGGGCGGTCTGCCACTCCGTGATGTTCTACCTCCTATTCCAATTCATGCTTTGGCTACCGCACTTGCAAATGCTCCTCCTGAACAGCAGAGGATGATGCTTGGGGAGGCTTTATATCCGCTGGTAGATCAGCTAGAACATGATTCAGCAGCCAAGGTTACTGGCATGCTTTTGGAGATGGACCAGCCTGAAGTATTACATTTGATTGAATCACCTGATGCTCTCAAGGCTAAAGTTGCTGAAGCCATGGATGTGCTGAGAAATGTTGCTCAACAAGGTAATAGCCTGGCGGATCAACTACCTTCACTATCTCTCAACGATAATCTGAAAGATTCGGAGGACATTGAAGAAACTGCGGCGCGAGAGGAAGAAGGGAGAATCATTTCAAAAGCTGAGATACTCTGA 504 0.4643 MLPRQRVYRYPSGRNIIQDAPVQNIAGGMMSYEMGGLPLRDVLPPIPIHALATALANAPPEQQRMMLGEALYPLVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVAQQGNSLADQLPSLSLNDNLKDSEDIEETAAREEEGRIISKAEIL 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02541 167 Pfam Poly-adenylate binding protein, unique domain 55 119 IPR002004 GO:0003723
Vifa6g02541 167 SMART poly_2 59 122 IPR002004 GO:0003723
Vifa6g02541 167 SUPERFAMILY PABC (PABP) domain 1 128 IPR036053 GO:0003723
Vifa6g02541 167 Gene3D - 45 126 - -
Vifa6g02541 167 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UBR5 59 152 - -
Vifa6g02541 167 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 47 124 IPR002004 GO:0003723
Vifa6g02541 167 FunFam Polyadenylate-binding protein 43 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02541 Vifa-Chr6 873677714 873678946 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02541 3 142 Eukaryotic Initiation Factors Gene Family AT1G49760 63.014 8.76e-46 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02541 K13126 - gmx:100784442 226.483