Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02533 ATGGCTTTAATCTCACAAACTGAGTTACCACTCAATGAAAACGATTCTCAAGACATGATCATATTCCAAATTCTTAATGAAGCCAATGAACTCAGCAACACAATGGTTCAACAAAGGCACCAAAATGGCCTAGAGCAAAGCAAGGATATTGAAAAGAAGAAGTACAGAGGTGTGAGGCGTCGGCCATGGGGAAAATATGCTGCGGAGATTCGTGACTCGGCGCGAAATGGAGCTAGGGTATGGCTTGGTACATTTAAAACTGCTGAAGAAGCTGCAATTGCTTATGATAAAGCTGCTTTTAGAATGAGGGGTTCTAAGGCCTTGTTGAATTTCCCACATGAGTTTTCTGCTTCTCTGCAATTGAGTTCAACTTCTAAGCATGGTTTGAGGTCAGGAAAAATCAACAATAAGAAATCTGAGTCTAGTGCTAGCAGCTCTTAG 441 0.415 MALISQTELPLNENDSQDMIIFQILNEANELSNTMVQQRHQNGLEQSKDIEKKKYRGVRRRPWGKYAAEIRDSARNGARVWLGTFKTAEEAAIAYDKAAFRMRGSKALLNFPHEFSASLQLSSTSKHGLRSGKINNKKSESSASSS 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02533 146 SUPERFAMILY DNA-binding domain 54 114 IPR016177 GO:0003677
Vifa6g02533 146 CDD AP2 53 113 IPR001471 GO:0003700|GO:0006355
Vifa6g02533 146 PANTHER DNA-BINDING DOMAIN 41 136 IPR044808 GO:0003700|GO:0009873
Vifa6g02533 146 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Vifa6g02533 146 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Vifa6g02533 146 FunFam Ethylene-responsive transcription factor 2 53 113 - -
Vifa6g02533 146 Gene3D AP2/ERF domain 53 114 IPR036955 GO:0003700|GO:0006355
Vifa6g02533 146 Pfam AP2 domain 54 104 IPR001471 GO:0003700|GO:0006355
Vifa6g02533 146 SMART rav1_2 54 118 IPR001471 GO:0003700|GO:0006355
Vifa6g02533 146 ProSiteProfiles AP2/ERF domain profile. 54 112 IPR001471 GO:0003700|GO:0006355
Vifa6g02533 146 MobiDBLite consensus disorder prediction 122 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02533 Vifa-Chr6 871347895 871348335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02533 5 112 AP2-EREBP Transcription Factor Family AT4G17500 47.482 5.63e-39 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa6g02533 AP2 2.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02533 K13433 - zju:107411165 178.718