Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02514 ATGGAAGAAAAACAAAAACCATTGTTAATGTTCTGCATTGTGCTATCAATCTTATCTCTAGCAACAAACGTATCATGTTTGAACCAAGATGGTCTCTACCTGTACCAATTCAAGCTCACCTTAGACGATCCCGACTCCTCTCTCTCTTCCTGGAACCCATCAGACACCACACCATGCAACTGGTACGGCGTCCGTTGCGACGCCACCAACACCACCGTAACAGAACTCGACCTCTCCGACACCAACATCCAAGGCCCATTCACAGCATCAATCCTCTGCCGTCTCCCCAACCTCTCCTCCATCAACCTCTTCAACAACTCCATTAACCAAACCTTCCCCCTCCAAATCTCCCTCTGTCAAAACCTCCTCCACCTCGACCTCTCTCAGAATCTCCTCACCGGCCCCCTCCCGGAAATCCTCTCCACTCTCACTAACCTCCGTTACCTCGACCTCACCGGAAACAACTTCTCCGGTAACATACCACTCTCCTTCGGCACATTCCAGAAACTCGAAGTACTCTCACTCGTGTCCAATCTTCTAGAAGGTACCATTCCTCCGTCTCTTGGAAACATTACTACTTTGAAAATGCTTAACCTCTCTTACAACCCGTTTTTCCCGGGTCGGATCCCTTCCGAACTCGGAAACCTAACTCACCTTGAAGTTCTATGGTTAACGCAATGCAACCTTGTTGGTGTGATTCCTGAAACTCTCGGGAAGCTGAAGAAGCTTAAGGATTTGGACCTTGCGTTGAATGATCTTTACGGTTCTATTCCGAGTTCGCTCACTGAGTTAACGAGTTTGAGACAGATTGAGTTGTATAATAACTCGTTATCTGGTGAGTTGCCGAGGGGAATGGGGAAGCTTACTAATTTGAGGCTTCTTGATGCGTCGATGAATCATTTGACGGGGAGGATTCCGGAGGAACTTTGTTCGTTGCCGTTGGAGAGTTTGAATCTCTATGAGAATCGTTTTGAGGGTGAGTTGCCGGCGAGTATAGCTGACTCGCCGAATCTCTATGAGTTAAGGTTGTTTGGAAACCGGCTTACCGGAAAGTTGCCGGAGAATCTCGGGAAACGGTCTCCTCTGAGGTGGCTTGACGTTTCGAGTAACCAGTTCTGGGGGAGTATTCCGGCGAGTTTGTGTGATCTTGGTGAGTTAGAGGAGCTTTTGATGATATATAATTTGTTCACCGGTGAGATTCCGGCGAGTTTGGGGACGTGTCAGAGCTTGTCGCGTGTACGTTTAGGTTATAACAGATTCTCCGGTGAGGTTCCGGCGGGGATCTGGGGTCTTCCTCATGTTTATCTTCTCGAACTTGCTCATAACTCGTTTTCCGGTTCCATTTCGAAGACCATTGCCGGAGCAGGGAACCTTTCGTTGTTGATTTTGTCGAAGAACAACTTCTCGGGAACTGTTCCCGATGAGGTTGGGTGGTTGGAAAATCTCGTCGAGTTTTCTGCCGCTGATAACATGTTCAGTGGCCCACTTCCAGATAGTTTGGTCAATCTTGGGCAGCTTGGCATTCTTGATTTTCACAACAACAGGCTTTCTGGGGAACTACCAAAGGGGATTCATTCTTGGAAGAAGCTCAATGATTTGAATTTGGCCAACAATGGAATTGGTGGGAAGATTCCCGATGAGATTGGTAGTTTATCAGTTCTTAATTTTCTTGATCTTTCGCGGAATCAGTTTTCAGGAAAAATCCCTCATGGGTTGCAGAATCTGAAGCTGAATCAGCTGAATTTTTCGTATAATCGACTTTTGGGAGAACTTCCTCCTCAGTTGGCTAAGGAAATGTACAAGTCTAGTTTCTTGGGGAACCCTGGTTTGTGTGGAGATTTGAAAGGTTTGTGTGATGGTAGGAATGAAGTGAAGAATTTGGGTTACGTTTGGTTGCTTCGAGCGATTTTTCTTCTAGCTGTTTTGGTTTTCCTAGTTGGTGTTGTCTGGTTCTATTTTAGGTACAAGAATTTCAAGGAAGCAAAAAGGGCTATTGATAAATCAAAATGGACTTTAATGTCATTCCATAAGCTTGGTTTTGGCGAAGACGAGATTTTGAATTGTCTTGATGAAGATAATGTCATTGGAAGTGGCTCTTCAGGAAAGGTTTACAAGGTTGTACTTAACAGCGGGGAAGCTGTTGCTGTGAAGAAGATATGGGGAGGGGCCAGAAAGGATGTGGAGAGTGGTGATGCTGAAAAGGGTAGGGTTCAAGACAATGCTTTTGATGCCGAGGTTGAAACTTTGGGAAAAATCAGACACAAGAACATTGTCAAGTTATGGTGTTGCTGTACCACTAGGGATTGTCAGCTTTTGGTTTACGAGTATATGCAAAACGGTAGTCTTGGTGATTTGCTTCATAGTAGTAAAGGAGGGTTGTTGGAATGGCCAACAAGATACAAGATAGCTGTGGATGCGGCAGATGGACTCTCTTATCTCCATCATGATTGTGTTCCGCCAATTGTTCACAGAGATGTTAAATCTAATAATATCTTGTTGGATGGAGACTTTGGTGCAAGGGTGGCTGATTTCGGATTAGCTAAGGTTGTCGAAATCACAGGGAAAGGAATTAAATCCATGTCCATCATTGCTGGTTCTTGTGGCTATATTGCACCAGAATATGCCTACACCCTTAGAGTGAACGAGAAGAGCGACATTTATAGTTTTGGTGTTGTTATACTTGAATTGGTTACTGGAAGACGGCCGGTGGATCCTGAATTCGGGGAGAAAGATTTGGTTAAATGGGTTTGCACTACATTGGATCAGAAAGGTGTGGACCATGTAATTGACTCGAGGCTAGATTCATGTTTCAAAGAAGAAATTTGCAAGGTTTTCAACATTGGCCTAATGTGCACTAGTCCTCTTCCAATCAACCGGCCTTCAATGAGAAGAGTAGTGAAGATGTTGCAAGAGGTAGGAATAGAGAACCAAATGAAACCTGCAAAGAAAGATGGAAAATTAACCCCTTATTACTATGATGATGCTTCTGATCATGGAAGTGTTGTTTGA 3009 0.4463 MEEKQKPLLMFCIVLSILSLATNVSCLNQDGLYLYQFKLTLDDPDSSLSSWNPSDTTPCNWYGVRCDATNTTVTELDLSDTNIQGPFTASILCRLPNLSSINLFNNSINQTFPLQISLCQNLLHLDLSQNLLTGPLPEILSTLTNLRYLDLTGNNFSGNIPLSFGTFQKLEVLSLVSNLLEGTIPPSLGNITTLKMLNLSYNPFFPGRIPSELGNLTHLEVLWLTQCNLVGVIPETLGKLKKLKDLDLALNDLYGSIPSSLTELTSLRQIELYNNSLSGELPRGMGKLTNLRLLDASMNHLTGRIPEELCSLPLESLNLYENRFEGELPASIADSPNLYELRLFGNRLTGKLPENLGKRSPLRWLDVSSNQFWGSIPASLCDLGELEELLMIYNLFTGEIPASLGTCQSLSRVRLGYNRFSGEVPAGIWGLPHVYLLELAHNSFSGSISKTIAGAGNLSLLILSKNNFSGTVPDEVGWLENLVEFSAADNMFSGPLPDSLVNLGQLGILDFHNNRLSGELPKGIHSWKKLNDLNLANNGIGGKIPDEIGSLSVLNFLDLSRNQFSGKIPHGLQNLKLNQLNFSYNRLLGELPPQLAKEMYKSSFLGNPGLCGDLKGLCDGRNEVKNLGYVWLLRAIFLLAVLVFLVGVVWFYFRYKNFKEAKRAIDKSKWTLMSFHKLGFGEDEILNCLDEDNVIGSGSSGKVYKVVLNSGEAVAVKKIWGGARKDVESGDAEKGRVQDNAFDAEVETLGKIRHKNIVKLWCCCTTRDCQLLVYEYMQNGSLGDLLHSSKGGLLEWPTRYKIAVDAADGLSYLHHDCVPPIVHRDVKSNNILLDGDFGARVADFGLAKVVEITGKGIKSMSIIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRRPVDPEFGEKDLVKWVCTTLDQKGVDHVIDSRLDSCFKEEICKVFNIGLMCTSPLPINRPSMRRVVKMLQEVGIENQMKPAKKDGKLTPYYYDDASDHGSVV 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02514 1002 Pfam Leucine rich repeat 96 156 IPR001611 GO:0005515
Vifa6g02514 1002 Pfam Leucine rich repeat 218 277 IPR001611 GO:0005515
Vifa6g02514 1002 Gene3D Ribonuclease Inhibitor 314 621 IPR032675 -
Vifa6g02514 1002 ProSiteProfiles Protein kinase domain profile. 689 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02514 1002 ProSitePatterns Protein kinases ATP-binding region signature. 695 718 IPR017441 GO:0005524
Vifa6g02514 1002 Gene3D Phosphorylase Kinase; domain 1 673 776 - -
Vifa6g02514 1002 SMART LRR_typ_2 264 287 IPR003591 -
Vifa6g02514 1002 SMART LRR_typ_2 288 312 IPR003591 -
Vifa6g02514 1002 SMART LRR_typ_2 95 119 IPR003591 -
Vifa6g02514 1002 SMART LRR_typ_2 143 169 IPR003591 -
Vifa6g02514 1002 SMART LRR_typ_2 383 407 IPR003591 -
Vifa6g02514 1002 SMART LRR_typ_2 551 574 IPR003591 -
Vifa6g02514 1002 SMART LRR_typ_2 216 239 IPR003591 -
Vifa6g02514 1002 SMART LRR_typ_2 503 526 IPR003591 -
Vifa6g02514 1002 FunFam Leucine-rich receptor-like protein kinase family protein 209 307 - -
Vifa6g02514 1002 FunFam Receptor-like protein kinase HSL1 313 620 - -
Vifa6g02514 1002 SUPERFAMILY RNI-like 75 441 - -
Vifa6g02514 1002 SUPERFAMILY Protein kinase-like (PK-like) 685 970 IPR011009 -
Vifa6g02514 1002 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Vifa6g02514 1002 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 777 986 - -
Vifa6g02514 1002 ProSitePatterns Serine/Threonine protein kinases active-site signature. 821 833 IPR008271 GO:0004672|GO:0006468
Vifa6g02514 1002 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 27 191 - -
Vifa6g02514 1002 Gene3D Ribonuclease Inhibitor 206 313 IPR032675 -
Vifa6g02514 1002 SUPERFAMILY L domain-like 386 611 - -
Vifa6g02514 1002 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 374 970 - -
Vifa6g02514 1002 Gene3D Ribonuclease Inhibitor 25 205 IPR032675 -
Vifa6g02514 1002 FunFam Receptor-like protein kinase HSL1 673 776 - -
Vifa6g02514 1002 Gene3D Transferase(Phosphotransferase) domain 1 777 993 - -
Vifa6g02514 1002 Pfam Protein kinase domain 691 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02514 1002 SMART serkin_6 689 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02514 Vifa-Chr6 866876775 866880023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02514 24 1002 Receptor kinase-like Gene Family AT1G28440 70.892 0.0 1422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa6g02514 Pkinase 1.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02514 - - gmx:100819887 1682.92