Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02511 ATGGAAGGGGAGGGTAGTTCGGAGGGAGAGAGTGATCGGAAAAGGGGTGGTGGCAGCGATGATAATAACAATAACGGTGAGAGTAATAGCAAGATTGCTGTTTCCAATGAAGGTCAGAGCAAGCCTAAGCGACAGATGAAGACGCCGTTTCAGCTTGAAACCCTTGAGAAAGCTTATGCATTGGATAATTACCCTTCGGAGCCTGTGAGGGTTGACTTGTCTGAGAAATTGGGGTTAACGGATCGGCAGCTGCAGATGTGGTTTTGCCACAGGAGATTGAAGGATAAGAAGGAGGCGTCGGCTCCCAAGAAGGAGGTGTCGGCTCCCAAGAAGGAGTCTGTTGCTGCTCCCAAGAAGGGGCCTGGGCCGGGGCCAGGGCCAGTGTCTCGTAAGCCAGCAGTCGAGCCTTTGCCGGATTCCCCGGTGGATGATCTTAGGTTAGGTTCCGATCATGGTAATGGGTATGGATCAGGGTCGGGTTCAGGTTCGAGTCCGTACACCCGGTTGGAGCCTCGGAATGCAATCCCTGTCAGTGTTGGTTACTATGAGTCCCCACAGGCTGAAATGGAGCTTAGAGCAATTGCTTGTGTGGAGGATCAGTTAGGTGAACCATTGAGGGAAGATGGGCCCATTCTAGGAATAGAGTTTGATCAATTGCCACCAGATGCATTTGGAGCACCTATAGTTACAGAACACCAGAAGAGACCTCGTCTTGCCTATGACAGTAAAATATATGGAAGACATGAAGTTAAAACAAACAAGGCTATGGCAAGGACTTTTCCGGAATATCAATATTCACCAAACCAGTCCGGTGCTAGATCTGATGCTTTTGGACAGTTCAGCCAATCTCATTTACATGTTCCAAAGGAGGGTCCATCCAAAAAGCCTCAGTCTGTGCTTGGTAATGAACGGCTACCTAGAATTCATGGCATCAAGGGTCATTCTTCTCGCGTCTCCCAACAAGACAAGCAAGGGAGTCCCTTCCAATCTCCTCCTCCGGACAATGTTACCCCCTCACGGGAATTGTACACAAGTACGGGTAAAGTTGGAATAAACTCCCACCTCACTGATAGCCAAACTGTTGGGCTGGAAAATACCTATGCTTCACCTAGTGGACAAACTTTGCAAAACAATGCAATGCATATCGATAGGAAACGAAAGGGTGATGATGCCAAAATTACAAGGGATGTTGACTCAAATGATATGAGAATCCGGAAAGAGCTCGAAAAACAAGAAAACCTCAGACGAAAGAATGAGGAGCGGGTAAAAAAAGAAATGGAGAGACAAGATCGTGAAAGAAGAAAGGAAGAAGAGAGATTGATGCGTGAGAGACTGCGTGAAGAGGAAAGAACAAAACGAGAGGAAAAACGTGAAAGTGAACGAAGGGAAAAGTATTTGCTGAGAGAAAATTTAAAAGCTGAGAGAATGAGGCAAAAAGAAGAGCTTCGGAAAGAGAAAGATGAAGAAAGAAGGAAAGCTGCCCTAGAGAAGGCAACTGCCCGTAAAATAGCTAGGGAATCCATGGAACTTATTGAGGATGAACAGCTGGAAATGATGGAGTTAGCTGCCTCAAGCAAGGGGCTTTCCTCTATTGTCCGTCTTGATTTTGATACTTTGCAAAACATTGAATCATTTAGGGGTTCATTGTGTCTTTTCCCACCTGAGAGTGTAAAGCTAAGAAAACCATTTGCTATCCAACCGTGGATCAATTCAGAAGAAAATATTGGCAACCTTCTCATGGTTTGGAGGTTTTTGATTACCTTTGCTGATGTTTTGGAGTTATGGCCTTTTACTCTTGATGAGTTCGTGCAAGCATTTCATGATTATGATTCAAGATTGTTGGGTGAGATACATGTTTCTCTCCTTAAGGTGATAATGAAAGACATTGAAGATGTTGCAAGGACACCTTCAGGATTAGGAATGAATCAGAATGGTGCTGCTAATTCTGGAGGCGGCCATCCAGAGATTGTGGAAGGGGCATATGCTTGGGGCTTTGACATAAGGAATTGGCATAAGCACTTAAATCAATTGACATGGCCAGAAATTTTCCGACAGCTAGCATTATCTGCAGGATATGGACCGCAGTTTAAGAAAAGCAGTATTCCATCTTCACGTGCAAATAATAAAAATGAGGGAAGAAGTTGTGAAGATGTCGTGTCTGCACTTCGTAATGGTTCAGCAGCTGTAAATGCCGTGGCAAAAATGCAGGAGAGAGGTCTATTAGGTCCTCGGAGATCTAGGCATCGGTTAACTCCTGGAACAGTTAAATTTGCAGCATTTCATGTTCTCTCACTAGAGGATGGTGAGGGATTGAATGTAATAGAGCTTGCCGAAAAAATTCAGAAATCTGGTCTTCGGGACCTGACGACCAGCAAGACACCCGAGGCATCAATTTCTGTTGCTTTGACAAGAGATGCCAAGCTTTTTGAAAGAGTAGCCCCATCAACTTATTGTGTACGTGCTGCATTTAGGAAGGATCCTGCTGATGCTGAGTCCATTCTTTCTGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTAGCTGAAGAAGATGCTGATGATGTTGAAAGAGAAGAGTCAGAAAGTGAAGTTGACGAGGATCCTGAAGTTGATGATTTGGTTAATCCTTCAAGTGTTCACAAAACATCTGAACTGTTTAATGATTTCTCATCAAATGGAAAAGAAAATCAAGGTCATGATGGAAAACTTAAAGAGGAGTTCGATAAGGATCTACCTTGTTTTCCTGACAATGGTTCCAAGAATGCTGATTATCCAAGTGCTGTTTCTGGACAACCTGTTGCTTGTGAAAATGTAAGTGCCAGAAATCTAGGCGAAGATAATATGGAAATTGACGAAAGTAAGTCTGGAGAGTCATGGATTCAAGGGCTCACTGAAGGAGAATATTCTGATCTCAGTGTAGAAGAGCGATTAAATGCTCTTGTTGTATTGGTTGGTGTGGCAAATGAAGGAAATTCAATCCGCGTTGTTCTCGAGGATCGATTGGAAGCAGCAAATGCTCTGAAGAAGCAAATGTTGGCAGAGGCACACATCGATAAAGCTCGCGTGAAAGATGATAATGTCAATAAGTCAGATTTTCTTACTATCAATGGTATCAAGGTTGAAACACAGCTCACTTGTGCTGCTGTGGAGAGCAATCCAAGCCCATTGCTTGATATTAATGTTTGCAATAATAATAATAATGATGATTCTCCCAGCAAATCAGAAAATAAAAGACTAGTTCTTGTTGGACAAAGCCTGCCTGAAAAGCTCTCATCAGGTCAAGATCTCTGCATAGGTCCTGATAATCCCCAGACTATGTTATCTGCACAATATTCAAAACGGTCACGATCTCAGTTAAAATCTTATATTTCCCACATAGCAGAAGAGATGTACATCTATAGATCCTTACCCCTTGGGCAAGACCGCAGACATAATCGATATTGGCAATTTGTTGCATCTGCTTCTTGCAATGATCCTGGCTCGGGCAGGATCTTTGTTGAATATCATGATGGCAGATGGAGGCTTATTGATTCCGAAGAGGCCTTTGACACACTTCTGAATTCACTGGATTCACGTGGGATCAGGGAATCTCATTTGCATCTAATGTTGCTAAAGATTGAGAATACATTTAAGGAAAATGTTCAAAAGAATGCAAAATGTGCCAAAATTGGAAACACAAACGAAATACGTGTTAAAAATGAAGCCGATGAAACAGATTCCAGTCCTGATCACCATACTAGTTCTGACAGTCCTAGCAGTACTCTTTGCGGCTTGAGCTCTGATACTTCAGAAACTTCGTCATCCTTCAGAATTGAGCTTGGGAAAAGTGAGAGCGACAAGAAAGCTGCCTTGAGAAGGTATCAAGATGTTCAAAAATGGATGTGGAAAGAATGCTATAACCCATCAATATTATGTGCAACAAAATATGGAAAAAAGAGATGCAAACCTCAGGTTGACATATGTGATATCTGTCTCAACCTTTATTGCTTGGAAGACTCTCATTGCAGTCATTGCCACCTTACTTTTCCGTCAAATGATGGATTAAATTTTTCTAAACATGCAATTCAATGTGGAGACAAGTTGCCCAAAGATATTTGTATTTCGGAATCTCCTCTTCCATTGCGAACAAGGTTGCTTAAGGCTCTGCTGGCTTTTATTGAGGTATCTGTTCCACCTGAAGCATTTCAATCAATTTGGACTGAGGATATTAGAAGGCTTTGGGGTGTGAAGTTGAACAGATCATCTTCCGCCGAAGAACTTCTACAGATATTGACTCTATTTGAGAGAGCACTAAAGCGAGACTTTTTATCATCACCTTTTGCTACAACTGGGGATTTGTTGGGGATGAACACTGTGTGGGAGAGTACTGCACTTACTTCTATGGATCTCAAGTCAGTTACTGTTCTTCCATGGGTTCCACGGACCACTTCAGCTGTGTCTCTCAGACTTTTAGAGTTTGACACATCAATCACCTATGTAAAGCTTGAGAAACCTGAGTCCTATCAGGAGAAAGAAGCTAGATACATAAAGCTTCCTTCAAGATATGCCTCTGTTAAATCTACTAAAGTGGCTGAACCATCATATATGGACTGTGATGAATTCATGAAAGTGAAGTCTGCCCCTATGAAAATTGCGCGAAGCAGCAAAAAACGGGCACGAGTGAATCATGACAAAGGAAGAGCTAAAAAGTTGTCTAAAAGAACAAATGATTCCAAACGAGATAATGGCCGCTTCAGTTTGCAGGTTACTGAGAATCTAAGTCAAAGAATAAATCAGTTTGGACAAGGATCACAAGGGCATGCAGGTGGACGTGGCCCCCGGACAGTTAGAAAAAGGAGAGAGGAGAATAGGGTTGTTGATGATTTGTTGCTGAGCGATAGGGCTGCCATTAATAGCTCCAATTTTAGTAGAGAACCATTGAGAATCATGGATGAGGACTGGAGTGATGAGAAGGCAAGTCCCGTACCGAGGGAAGCTGCTGACACGAGTAGCAGCAGTGAAGAGGATGAATATGATGACAACACCCAGGCAATGGAATCTGATGACAATGCGGAAGCAGTTGAGTATGGTCAAGGAAACTGGGAGATAGGTTTTAATGGTACCCCCAACAGATGGAATAGGGATTTGGTTGGAATGAGTGATGAAGAACGACACTTGGAGGCTTCCGAAGATGACAATGACAATGGCATTGAAGGGAATGAAGAGGAGGAGGAGGAGGAAGAAGAAGAGGATTCTGAAGCAGATGTTATTATGAGTGATGGTTCAGATGGAATGGCAAATAGAGTTGTAAACGAAGAAAGCTCAGACTCGAGTGACTCGGAAGATTATTCTGATTAG 5343 0.428 MEGEGSSEGESDRKRGGGSDDNNNNGESNSKIAVSNEGQSKPKRQMKTPFQLETLEKAYALDNYPSEPVRVDLSEKLGLTDRQLQMWFCHRRLKDKKEASAPKKEVSAPKKESVAAPKKGPGPGPGPVSRKPAVEPLPDSPVDDLRLGSDHGNGYGSGSGSGSSPYTRLEPRNAIPVSVGYYESPQAEMELRAIACVEDQLGEPLREDGPILGIEFDQLPPDAFGAPIVTEHQKRPRLAYDSKIYGRHEVKTNKAMARTFPEYQYSPNQSGARSDAFGQFSQSHLHVPKEGPSKKPQSVLGNERLPRIHGIKGHSSRVSQQDKQGSPFQSPPPDNVTPSRELYTSTGKVGINSHLTDSQTVGLENTYASPSGQTLQNNAMHIDRKRKGDDAKITRDVDSNDMRIRKELEKQENLRRKNEERVKKEMERQDRERRKEEERLMRERLREEERTKREEKRESERREKYLLRENLKAERMRQKEELRKEKDEERRKAALEKATARKIARESMELIEDEQLEMMELAASSKGLSSIVRLDFDTLQNIESFRGSLCLFPPESVKLRKPFAIQPWINSEENIGNLLMVWRFLITFADVLELWPFTLDEFVQAFHDYDSRLLGEIHVSLLKVIMKDIEDVARTPSGLGMNQNGAANSGGGHPEIVEGAYAWGFDIRNWHKHLNQLTWPEIFRQLALSAGYGPQFKKSSIPSSRANNKNEGRSCEDVVSALRNGSAAVNAVAKMQERGLLGPRRSRHRLTPGTVKFAAFHVLSLEDGEGLNVIELAEKIQKSGLRDLTTSKTPEASISVALTRDAKLFERVAPSTYCVRAAFRKDPADAESILSEARKKIQIFENGFLAEEDADDVEREESESEVDEDPEVDDLVNPSSVHKTSELFNDFSSNGKENQGHDGKLKEEFDKDLPCFPDNGSKNADYPSAVSGQPVACENVSARNLGEDNMEIDESKSGESWIQGLTEGEYSDLSVEERLNALVVLVGVANEGNSIRVVLEDRLEAANALKKQMLAEAHIDKARVKDDNVNKSDFLTINGIKVETQLTCAAVESNPSPLLDINVCNNNNNDDSPSKSENKRLVLVGQSLPEKLSSGQDLCIGPDNPQTMLSAQYSKRSRSQLKSYISHIAEEMYIYRSLPLGQDRRHNRYWQFVASASCNDPGSGRIFVEYHDGRWRLIDSEEAFDTLLNSLDSRGIRESHLHLMLLKIENTFKENVQKNAKCAKIGNTNEIRVKNEADETDSSPDHHTSSDSPSSTLCGLSSDTSETSSSFRIELGKSESDKKAALRRYQDVQKWMWKECYNPSILCATKYGKKRCKPQVDICDICLNLYCLEDSHCSHCHLTFPSNDGLNFSKHAIQCGDKLPKDICISESPLPLRTRLLKALLAFIEVSVPPEAFQSIWTEDIRRLWGVKLNRSSSAEELLQILTLFERALKRDFLSSPFATTGDLLGMNTVWESTALTSMDLKSVTVLPWVPRTTSAVSLRLLEFDTSITYVKLEKPESYQEKEARYIKLPSRYASVKSTKVAEPSYMDCDEFMKVKSAPMKIARSSKKRARVNHDKGRAKKLSKRTNDSKRDNGRFSLQVTENLSQRINQFGQGSQGHAGGRGPRTVRKRREENRVVDDLLLSDRAAINSSNFSREPLRIMDEDWSDEKASPVPREAADTSSSSEEDEYDDNTQAMESDDNAEAVEYGQGNWEIGFNGTPNRWNRDLVGMSDEERHLEASEDDNDNGIEGNEEEEEEEEEEDSEADVIMSDGSDGMANRVVNEESSDSSDSEDYSD 1780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02511 1780 MobiDBLite consensus disorder prediction 21 47 - -
Vifa6g02511 1780 MobiDBLite consensus disorder prediction 314 379 - -
Vifa6g02511 1780 MobiDBLite consensus disorder prediction 1 20 - -
Vifa6g02511 1780 Pfam Homeodomain 41 97 IPR001356 GO:0003677
Vifa6g02511 1780 CDD homeodomain 43 98 IPR001356 GO:0003677
Vifa6g02511 1780 MobiDBLite consensus disorder prediction 1593 1616 - -
Vifa6g02511 1780 MobiDBLite consensus disorder prediction 262 281 - -
Vifa6g02511 1780 Coils Coil 468 499 - -
Vifa6g02511 1780 MobiDBLite consensus disorder prediction 1247 1266 - -
Vifa6g02511 1780 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 957 1000 IPR028942 -
Vifa6g02511 1780 ProSiteProfiles 'Homeobox' domain profile. 38 98 IPR001356 GO:0003677
Vifa6g02511 1780 Coils Coil 408 462 - -
Vifa6g02511 1780 Coils Coil 996 1016 - -
Vifa6g02511 1780 Gene3D - 25 101 - -
Vifa6g02511 1780 Pfam HB1, ASXL, restriction endonuclease HTH domain 753 821 IPR007759 GO:0006355
Vifa6g02511 1780 MobiDBLite consensus disorder prediction 120 134 - -
Vifa6g02511 1780 ProSiteProfiles HARE-type HTH domain profile. 753 822 IPR007759 GO:0006355
Vifa6g02511 1780 Pfam DDT domain 573 628 IPR018501 -
Vifa6g02511 1780 MobiDBLite consensus disorder prediction 1728 1752 - -
Vifa6g02511 1780 MobiDBLite consensus disorder prediction 1548 1564 - -
Vifa6g02511 1780 MobiDBLite consensus disorder prediction 1548 1579 - -
Vifa6g02511 1780 MobiDBLite consensus disorder prediction 1711 1727 - -
Vifa6g02511 1780 MobiDBLite consensus disorder prediction 1667 1681 - -
Vifa6g02511 1780 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1136 1208 IPR028941 -
Vifa6g02511 1780 MobiDBLite consensus disorder prediction 154 168 - -
Vifa6g02511 1780 MobiDBLite consensus disorder prediction 93 112 - -
Vifa6g02511 1780 MobiDBLite consensus disorder prediction 93 170 - -
Vifa6g02511 1780 SMART testlast3 572 631 IPR018501 -
Vifa6g02511 1780 MobiDBLite consensus disorder prediction 260 438 - -
Vifa6g02511 1780 MobiDBLite consensus disorder prediction 1647 1780 - -
Vifa6g02511 1780 MobiDBLite consensus disorder prediction 380 438 - -
Vifa6g02511 1780 MobiDBLite consensus disorder prediction 1233 1266 - -
Vifa6g02511 1780 ProSiteProfiles DDT domain profile. 572 631 IPR018501 -
Vifa6g02511 1780 MobiDBLite consensus disorder prediction 852 879 - -
Vifa6g02511 1780 MobiDBLite consensus disorder prediction 1 50 - -
Vifa6g02511 1780 MobiDBLite consensus disorder prediction 852 874 - -
Vifa6g02511 1780 SMART HOX_1 40 102 IPR001356 GO:0003677
Vifa6g02511 1780 SUPERFAMILY Homeodomain-like 28 98 IPR009057 -
Vifa6g02511 1780 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 18 1780 IPR044977 GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02511 Vifa-Chr6 865347788 865356725 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02511 35 1705 Homeobox Transcription Factor Family AT1G28420 47.753 0.0 1298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vifa6g02511 WSD 1.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02511 - - gmx:100818817 2231.06