Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02510 ATGGAAGGGGAGGGTAGTTCGGAGGGAGAGAGTGATCGGAAAAGGGGTGGTGGCAGCGATGATAATAACAATAACGGTGAGAGTAATAGCAAGATTGCTGTTTCCAATGAAGGTCAGAGCAAGCCTAAGCGACAGATGAAGACGCCGTTTCAGCTTGAAACCCTTGAGAAAGCTTATGCATTGGATAATTACCCTTCGGAGCCTGTGAGGGTTGACTTGTCTGAGAAATTGGGGTTAACGGATCGGCAGCTGCAGATGTGGTTTTGCCACAGGAGATTGAAGGATAAGAAGGAGGCGTCGGCTCCCAAGAAGGAGGTGTCGGCTCCCAAGAAGGAGTCTGTTGCTGCTCCCAAGAAGGGGCCTGGGCCGGGGCCAGGGCCAGTGTCTCGTAAGCCAGCAGTCGAGCCTTTGCCGGATTCCCCGGTGGATGATCTTAGGTTAGGTTCCGATCATGGTAATGGGTATGGATCAGGGTCGGGTTCAGGTTCGAGTCCGTACACCCGGTTGGAGCCTCGGAATGCAATCCCTGTCAGTGTTGGTTACTATGAGTCCCCACAGGCTGAAATGGAGCTTAGAGCAATTGCTTGTGTGGAGGATCAGTTAGGTGAACCATTGAGGGAAGATGGGCCCATTCTAGGAATAGAGTTTGATCAATTGCCACCAGATGCATTTGGAGCACCTATAGCAGTTACAGAACACCAGAAGAGACCTCGTCTTGCCTATGACAGTAAAATATATGGAAGACATGAAGTTAAAACAAACAAGGCTATGGCAAGGACTTTTCCGGAATATCAATATTCACCAAACCAGTCCGGTGCTAGATCTGATGCTTTTGGACAGTTCAGCCAATCTCATTTACATGTTCCAAAGGAGGGTCCATCCAAAAAGCCTCAGTCTGTGCTTGGTAATGAACGGCTACCTAGAATTCATGGCATCAAGGGTCATTCTTCTCGCGTCTCCCAACAAGACAAGCAAGGGAGTCCCTTCCAATCTCCTCCTCCGGACAATGTTACCCCCTCACGGGAATTGTACACAAGTACGGGTAAAGTTGGAATAAACTCCCACCTCACTGATAGCCAAACTGTTGGGCTGGAAAATACCTATGCTTCACCTAGTGGACAAACTTTGCAAAACAATGCAATGCATATCGATAGGAAACGAAAGGGTGATGATGCCAAAATTACAAGGGATGTTGACTCAAATGATATGAGAATCCGGAAAGAGCTCGAAAAACAAGAAAACCTCAGACGAAAGAATGAGGAGCGGGTAAAAAAAGAAATGGAGAGACAAGATCGTGAAAGAAGAAAGGAAGAAGAGAGATTGATGCGTGAGAGACTGCGTGAAGAGGAAAGAACAAAACGAGAGGAAAAACGTGAAAGTGAACGAAGGGAAAAGTATTTGCTGAGAGAAAATTTAAAAGCTGAGAGAATGAGGCAAAAAGAAGAGCTTCGGAAAGAGAAAGATGAAGAAAGAAGGAAAGCTGCCCTAGAGAAGGCAACTGCCCGTAAAATAGCTAGGGAATCCATGGAACTTATTGAGGATGAACAGCTGGAAATGATGGAGTTAGCTGCCTCAAGCAAGGGGCTTTCCTCTATTGTCCGTCTTGATTTTGATACTTTGCAAAACATTGAATCATTTAGGGGTTCATTGTGTCTTTTCCCACCTGAGAGTGTAAAGCTAAGAAAACCATTTGCTATCCAACCGTGGATCAATTCAGAAGAAAATATTGGCAACCTTCTCATGGTTTGGAGGTTTTTGATTACCTTTGCTGATGTTTTGGAGTTATGGCCTTTTACTCTTGATGAGTTCGTGCAAGCATTTCATGATTATGATTCAAGATTGTTGGGTGAGATACATGTTTCTCTCCTTAAGGTGATAATGAAAGACATTGAAGATGTTGCAAGGACACCTTCAGGATTAGGAATGAATCAGAATGGTGCTGCTAATTCTGGAGGCGGCCATCCAGAGATTGTGGAAGGGGCATATGCTTGGGGCTTTGACATAAGGAATTGGCATAAGCACTTAAATCAATTGACATGGCCAGAAATTTTCCGACAGCTAGCATTATCTGCAGGATATGGACCGCAGTTTAAGAAAAGCAGTATTCCATCTTCACGTGCAAATAATAAAAATGAGGGAAGAAGTTGTGAAGATGTCGTGTCTGCACTTCGTAATGGTTCAGCAGCTGTAAATGCCGTGGCAAAAATGCAGGAGAGAGGTCTATTAGGTCCTCGGAGATCTAGGCATCGGTTAACTCCTGGAACAGTTAAATTTGCAGCATTTCATGTTCTCTCACTAGAGGATGGTGAGGGATTGAATGTAATAGAGCTTGCCGAAAAAATTCAGAAATCTGGTCTTCGGGACCTGACGACCAGCAAGACACCCGAGGCATCAATTTCTGTTGCTTTGACAAGAGATGCCAAGCTTTTTGAAAGAGTAGCCCCATCAACTTATTGTGTACGTGCTGCATTTAGGAAGGATCCTGCTGATGCTGAGTCCATTCTTTCTGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTAGCTGAAGAAGATGCTGATGATGTTGAAAGAGAAGAGTCAGAAAGTGAAGTTGACGAGGATCCTGAAGTTGATGATTTGGTTAATCCTTCAAGTGTTCACAAAACATCTGAACTGTTTAATGATTTCTCATCAAATGGAAAAGAAAATCAAGGTCATGATGGAAAACTTAAAGAGGAGTTCGATAAGGATCTACCTTGTTTTCCTGACAATGGTTCCAAGAATGCTGATTATCCAAGTGCTGTTTCTGGACAACCTGTTGCTTGTGAAAATGTAAGTGCCAGAAATCTAGGCGAAGATAATATGGAAATTGACGAAAGTAAGTCTGGAGAGTCATGGATTCAAGGGCTCACTGAAGGAGAATATTCTGATCTCAGTGTAGAAGAGCGATTAAATGCTCTTGTTGTATTGGTTGGTGTGGCAAATGAAGGAAATTCAATCCGCGTTGTTCTCGAGGATCGATTGGAAGCAGCAAATGCTCTGAAGAAGCAAATGTTGGCAGAGGCACACATCGATAAAGCTCGCGTGAAAGATGATAATGTCAATAAGTCAGATTTTCTTACTATCAATGGTATCAAGGTTGAAACACAGCTCACTTGTGCTGCTGTGGAGAGCAATCCAAGCCCATTGCTTGATATTAATGTTTGCAATAATAATAATAATGATGATTCTCCCAGCAAATCAGAAAATAAAAGACTAGTTCTTGTTGGACAAAGCCTGCCTGAAAAGCTCTCATCAGGTCAAGATCTCTGCATAGGTCCTGATAATCCCCAGACTATGTTATCTGCACAATATTCAAAACGGTCACGATCTCAGTTAAAATCTTATATTTCCCACATAGCAGAAGAGATGTACATCTATAGATCCTTACCCCTTGGGCAAGACCGCAGACATAATCGATATTGGCAATTTGTTGCATCTGCTTCTTGCAATGATCCTGGCTCGGGCAGGATCTTTGTTGAATATCATGATGGCAGATGGAGGCTTATTGATTCCGAAGAGGCCTTTGACACACTTCTGAATTCACTGGATTCACGTGGGATCAGGGAATCTCATTTGCATCTAATGTTGCTAAAGATTGAGAATACATTTAAGGAAAATGTTCAAAAGAATGCAAAATGTGCCAAAATTGGAAACACAAACGAAATACGTGTTAAAAATGAAGCCGATGAAACAGATTCCAGTCCTGATCACCATACTAGTTCTGACAGTCCTAGCAGTACTCTTTGCGGCTTGAGCTCTGATACTTCAGAAACTTCGTCATCCTTCAGAATTGAGCTTGGGAAAAGTGAGAGCGACAAGAAAGCTGCCTTGAGAAGGTATCAAGATGTTCAAAAATGGATGTGGAAAGAATGCTATAACCCATCAATATTATGTGCAACAAAATATGGAAAAAAGAGATGCAAACCTCAGGTTGACATATGTGATATCTGTCTCAACCTTTATTGCTTGGAAGACTCTCATTGCAGTCATTGCCACCTTACTTTTCCGTCAAATGATGGATTAAATTTTTCTAAACATGCAATTCAATGTGGAGACAAGTTGCCCAAAGATATTTGTATTTCGGAATCTCCTCTTCCATTGCGAACAAGGTTGCTTAAGGCTCTGCTGGCTTTTATTGAGGTATCTGTTCCACCTGAAGCATTTCAATCAATTTGGACTGAGGATATTAGAAGGCTTTGGGGTGTGAAGTTGAACAGATCATCTTCCGCCGAAGAACTTCTACAGATATTGACTCTATTTGAGAGAGCACTAAAGCGAGACTTTTTATCATCACCTTTTGCTACAACTGGGGATTTGTTGGGGATGAACACTGTGTGGGAGAGTACTGCACTTACTTCTATGGATCTCAAGTCAGTTACTGTTCTTCCATGGGTTCCACGGACCACTTCAGCTGTGTCTCTCAGACTTTTAGAGTTTGACACATCAATCACCTATGTAAAGCTTGAGAAACCTGAGTCCTATCAGGAGAAAGAAGCTAGATACATAAAGCTTCCTTCAAGATATGCCTCTGTTAAATCTACTAAAGTGGCTGAACCATCATATATGGACTGTGATGAATTCATGAAAGTGAAGTCTGCCCCTATGAAAATTGCGCGAAGCAGCAAAAAACGGGCACGAGTGAATCATGACAAAGGAAGAGCTAAAAAGTTGTCTAAAAGAACAAATGATTCCAAACGAGATAATGGCCGCTTCAGTTTGCAGGTTACTGAGAATCTAAGTCAAAGAATAAATCAGTTTGGACAAGGATCACAAGGGCATGCAGGTGGACGTGGCCCCCGGACAGTTAGAAAAAGGAGAGAGGAGAATAGGGTTGTTGATGATTTGTTGCTGAGCGATAGGGCTGCCATTAATAGCTCCAATTTTAGTAGAGAACCATTGAGAATCATGGATGAGGACTGGAGTGATGAGAAGGCAAGTCCCGTACCGAGGGAAGCTGCTGACACGAGTAGCAGCAGTGAAGAGGATGAATATGATGACAACACCCAGGCAATGGAATCTGATGACAATGCGGAAGCAGTTGAGTATGGTCAAGGAAACTGGGAGATAGGTTTTAATGGTACCCCCAACAGATGGAATAGGGATTTGGTTGGAATGAGTGATGAAGAACGACACTTGGAGGCTTCCGAAGATGACAATGACAATGGCATTGAAGGGAATGAAGAGGAGGAGGAGGAGGAAGAAGAAGAGGATTCTGAAGCAGATGTTATTATGAGTGATGGTTCAGATGGAATGGCAAATAGAGTTGTAAACGAAGAAAGCTCAGACTCGAGTGACTCGGAAGATTATTCTGATTAG 5346 0.4282 MEGEGSSEGESDRKRGGGSDDNNNNGESNSKIAVSNEGQSKPKRQMKTPFQLETLEKAYALDNYPSEPVRVDLSEKLGLTDRQLQMWFCHRRLKDKKEASAPKKEVSAPKKESVAAPKKGPGPGPGPVSRKPAVEPLPDSPVDDLRLGSDHGNGYGSGSGSGSSPYTRLEPRNAIPVSVGYYESPQAEMELRAIACVEDQLGEPLREDGPILGIEFDQLPPDAFGAPIAVTEHQKRPRLAYDSKIYGRHEVKTNKAMARTFPEYQYSPNQSGARSDAFGQFSQSHLHVPKEGPSKKPQSVLGNERLPRIHGIKGHSSRVSQQDKQGSPFQSPPPDNVTPSRELYTSTGKVGINSHLTDSQTVGLENTYASPSGQTLQNNAMHIDRKRKGDDAKITRDVDSNDMRIRKELEKQENLRRKNEERVKKEMERQDRERRKEEERLMRERLREEERTKREEKRESERREKYLLRENLKAERMRQKEELRKEKDEERRKAALEKATARKIARESMELIEDEQLEMMELAASSKGLSSIVRLDFDTLQNIESFRGSLCLFPPESVKLRKPFAIQPWINSEENIGNLLMVWRFLITFADVLELWPFTLDEFVQAFHDYDSRLLGEIHVSLLKVIMKDIEDVARTPSGLGMNQNGAANSGGGHPEIVEGAYAWGFDIRNWHKHLNQLTWPEIFRQLALSAGYGPQFKKSSIPSSRANNKNEGRSCEDVVSALRNGSAAVNAVAKMQERGLLGPRRSRHRLTPGTVKFAAFHVLSLEDGEGLNVIELAEKIQKSGLRDLTTSKTPEASISVALTRDAKLFERVAPSTYCVRAAFRKDPADAESILSEARKKIQIFENGFLAEEDADDVEREESESEVDEDPEVDDLVNPSSVHKTSELFNDFSSNGKENQGHDGKLKEEFDKDLPCFPDNGSKNADYPSAVSGQPVACENVSARNLGEDNMEIDESKSGESWIQGLTEGEYSDLSVEERLNALVVLVGVANEGNSIRVVLEDRLEAANALKKQMLAEAHIDKARVKDDNVNKSDFLTINGIKVETQLTCAAVESNPSPLLDINVCNNNNNDDSPSKSENKRLVLVGQSLPEKLSSGQDLCIGPDNPQTMLSAQYSKRSRSQLKSYISHIAEEMYIYRSLPLGQDRRHNRYWQFVASASCNDPGSGRIFVEYHDGRWRLIDSEEAFDTLLNSLDSRGIRESHLHLMLLKIENTFKENVQKNAKCAKIGNTNEIRVKNEADETDSSPDHHTSSDSPSSTLCGLSSDTSETSSSFRIELGKSESDKKAALRRYQDVQKWMWKECYNPSILCATKYGKKRCKPQVDICDICLNLYCLEDSHCSHCHLTFPSNDGLNFSKHAIQCGDKLPKDICISESPLPLRTRLLKALLAFIEVSVPPEAFQSIWTEDIRRLWGVKLNRSSSAEELLQILTLFERALKRDFLSSPFATTGDLLGMNTVWESTALTSMDLKSVTVLPWVPRTTSAVSLRLLEFDTSITYVKLEKPESYQEKEARYIKLPSRYASVKSTKVAEPSYMDCDEFMKVKSAPMKIARSSKKRARVNHDKGRAKKLSKRTNDSKRDNGRFSLQVTENLSQRINQFGQGSQGHAGGRGPRTVRKRREENRVVDDLLLSDRAAINSSNFSREPLRIMDEDWSDEKASPVPREAADTSSSSEEDEYDDNTQAMESDDNAEAVEYGQGNWEIGFNGTPNRWNRDLVGMSDEERHLEASEDDNDNGIEGNEEEEEEEEEEDSEADVIMSDGSDGMANRVVNEESSDSSDSEDYSD 1781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02510 1781 MobiDBLite consensus disorder prediction 21 47 - -
Vifa6g02510 1781 MobiDBLite consensus disorder prediction 1549 1565 - -
Vifa6g02510 1781 SUPERFAMILY Homeodomain-like 28 98 IPR009057 -
Vifa6g02510 1781 MobiDBLite consensus disorder prediction 1549 1580 - -
Vifa6g02510 1781 MobiDBLite consensus disorder prediction 1 20 - -
Vifa6g02510 1781 Pfam Homeodomain 41 97 IPR001356 GO:0003677
Vifa6g02510 1781 CDD homeodomain 43 98 IPR001356 GO:0003677
Vifa6g02510 1781 ProSiteProfiles HARE-type HTH domain profile. 754 823 IPR007759 GO:0006355
Vifa6g02510 1781 MobiDBLite consensus disorder prediction 1648 1781 - -
Vifa6g02510 1781 SMART testlast3 573 632 IPR018501 -
Vifa6g02510 1781 Pfam HB1, ASXL, restriction endonuclease HTH domain 754 822 IPR007759 GO:0006355
Vifa6g02510 1781 ProSiteProfiles 'Homeobox' domain profile. 38 98 IPR001356 GO:0003677
Vifa6g02510 1781 MobiDBLite consensus disorder prediction 1234 1267 - -
Vifa6g02510 1781 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1137 1209 IPR028941 -
Vifa6g02510 1781 Gene3D - 25 101 - -
Vifa6g02510 1781 MobiDBLite consensus disorder prediction 853 880 - -
Vifa6g02510 1781 MobiDBLite consensus disorder prediction 853 875 - -
Vifa6g02510 1781 MobiDBLite consensus disorder prediction 120 134 - -
Vifa6g02510 1781 Pfam DDT domain 574 629 IPR018501 -
Vifa6g02510 1781 Coils Coil 469 500 - -
Vifa6g02510 1781 MobiDBLite consensus disorder prediction 154 168 - -
Vifa6g02510 1781 MobiDBLite consensus disorder prediction 1248 1267 - -
Vifa6g02510 1781 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 958 1001 IPR028942 -
Vifa6g02510 1781 ProSiteProfiles DDT domain profile. 573 632 IPR018501 -
Vifa6g02510 1781 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 18 1781 IPR044977 GO:0006357
Vifa6g02510 1781 MobiDBLite consensus disorder prediction 93 112 - -
Vifa6g02510 1781 Coils Coil 409 463 - -
Vifa6g02510 1781 MobiDBLite consensus disorder prediction 93 170 - -
Vifa6g02510 1781 MobiDBLite consensus disorder prediction 315 380 - -
Vifa6g02510 1781 MobiDBLite consensus disorder prediction 309 439 - -
Vifa6g02510 1781 MobiDBLite consensus disorder prediction 1729 1753 - -
Vifa6g02510 1781 MobiDBLite consensus disorder prediction 1668 1682 - -
Vifa6g02510 1781 MobiDBLite consensus disorder prediction 1712 1728 - -
Vifa6g02510 1781 MobiDBLite consensus disorder prediction 381 439 - -
Vifa6g02510 1781 Coils Coil 997 1017 - -
Vifa6g02510 1781 MobiDBLite consensus disorder prediction 1 50 - -
Vifa6g02510 1781 SMART HOX_1 40 102 IPR001356 GO:0003677
Vifa6g02510 1781 MobiDBLite consensus disorder prediction 1594 1617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02510 Vifa-Chr6 865347788 865356725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02510 35 1706 Homeobox Transcription Factor Family AT1G28420 47.784 0.0 1305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vifa6g02510 WSD 1.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02510 - - gmx:100818817 2232.99