Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02497 ATGTCAGAAAATCAGCATTCTCGCGTGGAAGAATCTCTCCAAGAGAACCAGGTGACTAAGAATGAAGAGAAACCCGAAGATGAACTTGATTTCACTCAAAAGCATTCCTCTGAAAATGTTGAAGAAGATGATGATGAAAAAGAGGAAGGGGAAGAGGAGGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGTATCTGGTGTTCAATTTATCTTCAATTCGAACAGAAATCGAATGCCCTATCTGTCTTGGTATCATTCGAAACACAAGCACTGTAATGGAATGCTTGCATCGCTTTTGCAGAGAGTGCATACACAAGAGCATTCGACTTGGTAACAAAGAATGTCCTACTTGTCGTGTACATTGTCCTAGCAAAAGGTCACTGAGAGATGATCCATCCTATGATGCTTTGATTCAAGTTTTGTGTCCTGATATTGACAAGTTTGAGAAAGAGGAATTGGCTTCGATTGAAGAAGAATTGGATCTGCCTAATAAGAAGGTGTAG 579 0.3903 MSENQHSRVEESLQENQVTKNEEKPEDELDFTQKHSSENVEEDDDEKEEGEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEYLVFNLSSIRTEIECPICLGIIRNTSTVMECLHRFCRECIHKSIRLGNKECPTCRVHCPSKRSLRDDPSYDALIQVLCPDIDKFEKEELASIEEELDLPNKKV 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02497 192 CDD RING-HC_RING1-like 101 163 - -
Vifa6g02497 192 MobiDBLite consensus disorder prediction 1 90 - -
Vifa6g02497 192 ProSitePatterns Zinc finger RING-type signature. 120 129 IPR017907 -
Vifa6g02497 192 ProSiteProfiles Zinc finger RING-type profile. 104 144 IPR001841 -
Vifa6g02497 192 SMART ring_2 104 143 IPR001841 -
Vifa6g02497 192 Pfam Zinc finger, C3HC4 type (RING finger) 103 143 - -
Vifa6g02497 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 166 IPR013083 -
Vifa6g02497 192 SUPERFAMILY RING/U-box 103 159 - -
Vifa6g02497 192 Coils Coil 40 91 - -
Vifa6g02497 192 MobiDBLite consensus disorder prediction 42 90 - -
Vifa6g02497 192 MobiDBLite consensus disorder prediction 1 41 - -
Vifa6g02497 192 PANTHER OS11G0578200 PROTEIN 17 186 IPR044592 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02497 Vifa-Chr6 861397449 861399152 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02497 102 146 C3H Transcription Factor Family AT3G23060 43.478 3.63e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02497 K10695 - psat:127104973 203.756