Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02494 ATGGAGACAAGAAGGTCAGAGGGAAAAAGAACTTCGAGTTTGAGGCACAAAGAGGTGGTGAACAATCATGAAGAAATGGGACAGGAAGATGAAGATGAAATGGATTTTGAAGAGGAGGAGGAAGGTAGAAAGAAGAGGGTGGTAACAGATCTGTATAGTAAAACAAGGTCCAAAGGTGGAGGGTCAAATATTCCACCTTGTTGTCAAGTGGAGAATTGTGATGCTGATCTAAGTGAAGCTAAACAGTATCATCGGAGACATAAGGTATGTGAGTATCATGCTAAGGCACCTGCCGTACACATTGCAGAGATGCACCAAAGGTTTTGTCAGCAATGTAGCAGATTCCACAAGCTATCTGAATTTGATGACACAAAAAGGAGTTGTAGAAGACGTTTGGCTGGACATAATGAGAGGCGTCGCAAAAATGCAGGTGACTATCAAGGAGAATGA 450 0.4244 METRRSEGKRTSSLRHKEVVNNHEEMGQEDEDEMDFEEEEEGRKKRVVTDLYSKTRSKGGGSNIPPCCQVENCDADLSEAKQYHRRHKVCEYHAKAPAVHIAEMHQRFCQQCSRFHKLSEFDDTKRSCRRRLAGHNERRRKNAGDYQGE 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02494 149 Pfam SBP domain 68 141 IPR004333 GO:0003677
Vifa6g02494 149 ProSiteProfiles Zinc finger SBP-type profile. 65 142 IPR004333 GO:0003677
Vifa6g02494 149 Gene3D - 59 129 IPR036893 GO:0003677|GO:0005634
Vifa6g02494 149 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 42 143 IPR044817 GO:0003677
Vifa6g02494 149 MobiDBLite consensus disorder prediction 1 61 - -
Vifa6g02494 149 FunFam Squamosa promoter-binding-like protein 14 59 129 - -
Vifa6g02494 149 PIRSF SBP 1 149 IPR017238 GO:0003677|GO:0003700|GO:0009908
Vifa6g02494 149 Coils Coil 20 40 - -
Vifa6g02494 149 MobiDBLite consensus disorder prediction 1 24 - -
Vifa6g02494 149 SUPERFAMILY SBT domain 65 145 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02494 Vifa-Chr6 860896909 860903138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02494 58 145 SBP-box Gene Family AT2G33810 70.455 2.28e-43 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vifa6g02494 SBP 2.1e-32 No_clan