Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa6g02492 | ATGAAGTTCAACGTTGCGAATCCCACCACTGGATGCCAGAAGAAGCTGGAAATCGATGACGACACGAAGCTTCGTGCATTTTGGGACAAGAGGATCTCACAAGAGGTTCTTGGTGATGCTTTGGGCGAGGAGTTTAAAGGATATGTTTTCAAGATTACTGGTGGGTGTGACAAACAAGGATTCCCAATGAAGCAGGGTGTGTTGACACCTGGCCGTGTTAGACTCTTGCTCCACAGAGGCACTCCTTGTTTCCGTGGACACGGAAGGCGTAATGGAGAGCGTAGAAGAAAGTCTGTTCGTGGATGCATTGTCAGCCCCGACCTATCTGTTTTGAACTTGGTAATTGTGAAGAAAGGTCCTAAGAGAGCATCCAAAATCCGCAAGCTGTTCAACCTGTCAAAGGAAGATGATGTGCGGAAATATGTCAACACCTATCGTCGTACTTTTACCACCAAAGCTGGGAAAAAGGAGAGCAAAGCTCCCAAGATACAACGTCTTGTCACACCTTTGACACTCCAAAGGAAGCGAGCAAGAATTGCAGATAAGAAAAAGAGAATTGCCAAGGCTAAATCAGAGGCAGCAGACTATCAGAAACTCCTTGCATCCAGATTGAAGGAGCAGAGGGACCGCCGTAGTGAGAGCTTAGCGAAGAAGAGGTCTAGACTATCCACTGCTACCAAGCCAACTGCCACAGCATAG | 699 | 0.4735 | MKFNVANPTTGCQKKLEIDDDTKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKESKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAADYQKLLASRLKEQRDRRSESLAKKRSRLSTATKPTATA | 232 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa6g02492 | 232 | MobiDBLite | consensus disorder prediction | 202 | 232 | - | - | |
| Vifa6g02492 | 232 | PIRSF | RPS6e | 1 | 232 | IPR014401 | GO:0003735|GO:0005840|GO:0006412 | |
| Vifa6g02492 | 232 | Coils | Coil | 172 | 199 | - | - | |
| Vifa6g02492 | 232 | Gene3D | - | 117 | 217 | - | - | |
| Vifa6g02492 | 232 | SMART | Ribosomal_S6e_2 | 1 | 128 | IPR001377 | GO:0003735|GO:0005840|GO:0006412 | |
| Vifa6g02492 | 232 | PANTHER | 40S RIBOSOMAL PROTEIN S6 | 1 | 222 | IPR001377 | GO:0003735|GO:0005840|GO:0006412 | |
| Vifa6g02492 | 232 | ProSitePatterns | Ribosomal protein S6e signature. | 52 | 63 | IPR018282 | GO:0003735|GO:0005840|GO:0006412 | |
| Vifa6g02492 | 232 | MobiDBLite | consensus disorder prediction | 202 | 220 | - | - | |
| Vifa6g02492 | 232 | Pfam | Ribosomal protein S6e | 1 | 123 | IPR001377 | GO:0003735|GO:0005840|GO:0006412 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa6g02492 | Vifa-Chr6 | 859742485 | 859744894 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa6g02492 | 1 | 231 | Cytoplasmic Ribosomal Protein Gene Family | AT5G10360 | 78.879 | 3.04e-124 | 348 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa6g02492 | K02991 | - | gmx:100786559 | 397.897 |