Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02481 ATGGCTTCTGCACATTCCTCAGCTCTCAATTCTCTCTCTTCTCTCTCTTTCCGTTCCTCTTCTTCTTCCTCTCGTTTCTCTCTCCTCCCCACAACCAACAAACTGACATTCCCTCTCCTCACCAAAACCACCACTCTCTCCTTCACCACGAAAGCCACCCCCTTCGACGACAACTCATTCGTCTCCGAAGAAATTCTTCCGGTCAACCCACCCGAAGTCCCGGAAGGCTTCATCGCCCCACCTTCCATATTCGAGGGACCAGACGAAGAAAAAGATGAAATTACTGCTGCATATGAAGATATTTACGGGACGGCGTACAGTGGGGTGAGTGTGCTTGGAAATGATGTATATGCGATGGATTCAAAGACGAGGAAGGCGAGTGGGCTTCGTACTCGACGGAAGACAGAGAAGCTTAGAGATGGGTTTCAAGAAAGAGTTGTGCAAGTGAACAGGGTTAGTAAGGTTGTTAAAGGAGGGAAACGAATGAGCTTTAGGGCTATTGTTGTTGTTGGTGATAGGAAAGGACAAGTTGGTATTGGTGTTGGGAAGGCTAAGGAAGTTGTGTCTGCTATTCAGAAAGCTGCTATTAATGGTAGGAGGAATCTTATTAAAGTTCCCTTGACTAAGAACTTCACTTTTCCTCATAGATCAGACGGAGAGTATGGAGCAGCAAAAGTGATGCTTAGACCTGCTTTTTCCGGTTCTGGAGTTATTGCTGGTGGATCTGTGAGAATTGTTCTTGAAATGGCAGGTGTTGAGAATGCTTTGGGGAAACAACTAGGAAGTGACAATCCACTCAACAATGCCAGAGCAACTGTAGCTGCAATGCAGAAAATGAAGCAGTACACTCAGGTCTCCGAAGAGCGTGGGATTCCTATAGAAGAGTTATGGAAGTAA 897 0.4604 MASAHSSALNSLSSLSFRSSSSSSRFSLLPTTNKLTFPLLTKTTTLSFTTKATPFDDNSFVSEEILPVNPPEVPEGFIAPPSIFEGPDEEKDEITAAYEDIYGTAYSGVSVLGNDVYAMDSKTRKASGLRTRRKTEKLRDGFQERVVQVNRVSKVVKGGKRMSFRAIVVVGDRKGQVGIGVGKAKEVVSAIQKAAINGRRNLIKVPLTKNFTFPHRSDGEYGAAKVMLRPAFSGSGVIAGGSVRIVLEMAGVENALGKQLGSDNPLNNARATVAAMQKMKQYTQVSEERGIPIEELWK 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02481 298 ProSiteProfiles S5 double stranded RNA-binding domain profile. 142 205 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vifa6g02481 298 Gene3D - 208 297 IPR014721 -
Vifa6g02481 298 SUPERFAMILY Ribosomal protein S5 domain 2-like 212 290 IPR020568 -
Vifa6g02481 298 SUPERFAMILY dsRNA-binding domain-like 138 207 - -
Vifa6g02481 298 FunFam 30S ribosomal protein S5 131 203 - -
Vifa6g02481 298 ProSitePatterns Ribosomal protein S5 signature. 159 191 IPR018192 -
Vifa6g02481 298 Gene3D - 133 204 - -
Vifa6g02481 298 Pfam Ribosomal protein S5, C-terminal domain 219 289 IPR005324 GO:0003735|GO:0005840|GO:0006412
Vifa6g02481 298 Hamap 30S ribosomal protein S5 [rpsE]. 119 295 IPR005712 GO:0003735|GO:0006412|GO:0015935
Vifa6g02481 298 FunFam 30S ribosomal protein S5 207 298 - -
Vifa6g02481 298 Pfam Ribosomal protein S5, N-terminal domain 142 206 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vifa6g02481 298 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN S5 135 293 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vifa6g02481 298 NCBIfam 30S ribosomal protein S5 141 295 IPR005712 GO:0003735|GO:0006412|GO:0015935
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02481 142 298 Cytoplasmic Ribosomal Protein Gene Family AT1G58380 32.121 1.43e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02481 K02988 - gmx:100820232 355.525