Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02479 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAGACCATCACTCTCGAAGTTGAGAGTTCAGATACCATAGACAATGTTAAGGCCAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAGCAGCGTCTCATTTTTGCCGGCAAACAACTAGAGGATGGCCGTACCCTTGCTGATTACAACATACAGAAGGAATCTACACTCCATTTGGTGCTCCGTCTCCGTGGTGGGATGCAAATCTTTGTGAAAACTCTCACTGGAAAGACCATCACCCTTGAGGTCGAGAGCTCTGATACCATTGACAATGTCAAAGCCAAGATTCAGGATAAAGAGGGCATTCCACCCGACCAACAGAGACTTATCTTTGCTGGCAAACAGCTTGAGGATGGCAGAACTTTAGCAGATTACAACATTCAGAAGGAATCTACACTCCATTTGGTGCTCCGTCTCCGTGGTGGGATGCAGATTTTTGTCAAGACTCTTACTGGCAAGACAATCACTTTGGAGGTAGAGAGCTCAGACACAATTGACAATGTGAAGGCTAAGATACAGGACAAGGAGGGTATCCCCCCTGACCAGCAAAGGCTCATCTTTGCTGGCAAACAGCTCGAAGATGGCAGAACTTTGGCCGATTACAACATCCAGAAAGAATCCACCCTCCATCTTGTGTTGCGACTTCGTGGTGGTATGCAGATTTTTGTCAAGACCCTTACTGGCAAGACAATTACTTTGGAGGTAGAGAGCTCAGACACAATTGACAATGTGAAGGCTAAGATACAGGACAAGGAGGGTATTCCCCCAGACCAGCAGAGATTGATTTTTGCGGGAAAGCAGCTTGAAGATGGCCGAACTTTGGCCGATTATAACATTCAGAAGGAGTCCACCCTTCACCTTGTTCTTCGTCTGAGGGGAGGCAAAAATACAAGACAAGGAGGGAATCCCACCAGATCAGCAGAGGTTGATCTTTGCTGGAAAGCAATTGGAGGATGGAAGGACCCTTGCGGATTACAACATTCAGAAGGAGTCTACACTTCACCTAGTTTTGCGCCTTCGTGGTGGAAGTTAAGAAATGGGGAGGACACATTTGTGTGGCTAGGTCCTTGGATCTGGCATATAGGTACAGGCCAATGGAGCTTCAACTGGAATAGGGATTTATCTCAAGACGAGTCCACCTTCTGCTTGGAACAAACCCGTCCTTTTAAAGGTGTGGTCGGCGATCATCCGATGGTTAAGCATATCTACTGCGGTGCACAACTCACCTATACCAAACTTTCAGCAACTCAGCGGGCTCCCAAGTCAGTGCTTGGGGTTTGTCGAATGAACTTTCAGTTAGGTTCAGGTCTGAGCAGCGTTTGTAGATACACCAAGTTCGGTGGTCGTAGTTCTCTTTGTCCAAATTTTCGAGAGCATTGCGGCTGTCCTGAACTTGTTTGGGTGCTGCTGTTATATCAGTTCGGTGTGGCGGAATTCTCCGGGTTTCTAAGATGGTTTAGCTTTCAGTTTTGCTTTGATGTTATCTTTTGGTTGGTTCATCTCAGTTTTAGACTTGGTGGTACCATTGGAGTTGTTTAA 1569 0.4659 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGKNTRQGGNPTRSAEVDLCWKAIGGWKDPCGLQHSEGVYTSPSFAPSWWKLRNGEDTFVWLGPWIWHIGTGQWSFNWNRDLSQDESTFCLEQTRPFKGVVGDHPMVKHIYCGAQLTYTKLSATQRAPKSVLGVCRMNFQLGSGLSSVCRYTKFGGRSSLCPNFREHCGCPELVWVLLLYQFGVAEFSGFLRWFSFQFCFDVIFWLVHLSFRLGGTIGVV 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02479 522 FunFam Polyubiquitin 3 153 228 - -
Vifa6g02479 522 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Vifa6g02479 522 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Vifa6g02479 522 Gene3D - 229 320 - -
Vifa6g02479 522 Gene3D - 1 76 - -
Vifa6g02479 522 Gene3D - 77 152 - -
Vifa6g02479 522 Gene3D - 153 228 - -
Vifa6g02479 522 ProSitePatterns Ubiquitin domain signature. 255 280 IPR019954 -
Vifa6g02479 522 PRINTS Ubiquitin signature 53 74 IPR019956 -
Vifa6g02479 522 PRINTS Ubiquitin signature 32 52 IPR019956 -
Vifa6g02479 522 PRINTS Ubiquitin signature 11 31 IPR019956 -
Vifa6g02479 522 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Vifa6g02479 522 ProSiteProfiles Ubiquitin domain profile. 229 304 IPR000626 GO:0005515
Vifa6g02479 522 CDD Ubl_ubiquitin 1 76 - -
Vifa6g02479 522 CDD Ubl_ubiquitin 153 228 - -
Vifa6g02479 522 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Vifa6g02479 522 FunFam Polyubiquitin 3 1 76 - -
Vifa6g02479 522 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Vifa6g02479 522 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515
Vifa6g02479 522 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Vifa6g02479 522 Pfam Ubiquitin family 231 302 IPR000626 GO:0005515
Vifa6g02479 522 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Vifa6g02479 522 PANTHER UBIQUITIN 229 306 - -
Vifa6g02479 522 SUPERFAMILY Ubiquitin-like 228 305 IPR029071 -
Vifa6g02479 522 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Vifa6g02479 522 SUPERFAMILY Ubiquitin-like 152 228 IPR029071 -
Vifa6g02479 522 ProSitePatterns Ubiquitin domain signature. 179 204 IPR019954 -
Vifa6g02479 522 SMART ubq_7 229 300 IPR000626 GO:0005515
Vifa6g02479 522 SMART ubq_7 1 72 IPR000626 GO:0005515
Vifa6g02479 522 SMART ubq_7 77 148 IPR000626 GO:0005515
Vifa6g02479 522 SMART ubq_7 153 224 IPR000626 GO:0005515
Vifa6g02479 522 FunFam Polyubiquitin 3 77 152 - -
Vifa6g02479 522 FunFam Polyubiquitin 3 229 304 - -
Vifa6g02479 522 CDD Ubl_ubiquitin 77 152 - -
Vifa6g02479 522 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Vifa6g02479 522 CDD Ubl_ubiquitin 229 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02479 Vifa-Chr6 857337257 857339728 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02479 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 3.97e-46 155