Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02469 ATGATAGAAAAGTGGAAGAAAAAGAAAAAGAAAAGGAAACAATCCAACCTTCCACGAAACATATTGAAGATGTGTGAAAATATGATGGAGATAAACTTTGGTGATTCCATAATAAGCACTTTATCTTGTGATAAAGATGGTTCCCTCAAGAAGTCATCATTATTAAAGTGCCCTCCACCATTTTTGTTGAAGACTTATGAATTATTGGAAGAAGGTAGTGAAGTTGAAGATGGGATGAAAATAGTGTCATGGAATGAAGAAGGAAATGGTTTTGTTGTTTGGTTTCCAGCTGAATTCTCAGAGCTTATCTTGCCTAGATATTTCAAACACAACAATTTCTCTAGCTTTATTCGACAATTGAATACTTATGGGTTTAGAAAAATATCATCTAAAAGATGGGAATTCCAGCATGAGAAATTTCAAAAGGGTTGCAAGCAAATGTTGGTTGAAATCAGTAGGAAAAAGTGTGAGCCAAGTGTGTTTCCTTCATACCTCAAATCTTGTTCAGAGGAAAATGCAACAACTAATAATTCATCGGTAGAAGAAAATACTAATGAGAATCATGAACTACTTATGGAGGAGAACAAGAACCTAAAGAAAGAGAAATTAGAGTTGCAAATGCAAATAGCTGAATGTAAGGCACTTGAAATGAAGTTGTTGGAGTGTCTCTCTCAATGTATGGATATCCAACAAAATAAAGTTAGAAGATTATGTTAA 717 0.3361 MIEKWKKKKKKRKQSNLPRNILKMCENMMEINFGDSIISTLSCDKDGSLKKSSLLKCPPPFLLKTYELLEEGSEVEDGMKIVSWNEEGNGFVVWFPAEFSELILPRYFKHNNFSSFIRQLNTYGFRKISSKRWEFQHEKFQKGCKQMLVEISRKKCEPSVFPSYLKSCSEENATTNNSSVEENTNENHELLMEENKNLKKEKLELQMQIAECKALEMKLLECLSQCMDIQQNKVRRLC 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02469 238 Pfam HSF-type DNA-binding 61 154 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa6g02469 238 Gene3D - 55 155 IPR036388 -
Vifa6g02469 238 SUPERFAMILY "Winged helix" DNA-binding domain 58 154 IPR036390 -
Vifa6g02469 238 ProSitePatterns HSF-type DNA-binding domain signature. 104 128 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa6g02469 238 PRINTS Heat shock factor (HSF) domain signature 103 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa6g02469 238 PRINTS Heat shock factor (HSF) domain signature 116 128 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa6g02469 238 SMART hsfneu3 57 154 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa6g02469 238 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 53 217 IPR027725 -
Vifa6g02469 238 FunFam Heat stress transcription factor A-6b 54 155 - -
Vifa6g02469 238 Coils Coil 181 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02469 Vifa-Chr6 854373385 854375914 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02469 57 238 HSF AT4G36990 37.745 8.98e-38 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vifa6g02469 HSF_DNA-bind 6e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02469 K09419 - gmx:100789792 250.366