Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02440 ATGGGTTTGAGTTCTAAACAGGTTATTTCTAGCACTGGACTTGATTGGAAGCAAACCTTATTGGAATCTCAAGATTTGGAACTTCCAAAGCCTCATCATTTAATGAGGAAACAGCAACAAAGTCCTCAGCAGCAATCAGCAGAACATTTGAAGTGTCCAAGATGTGATTCAACAAACACAAAGTTTTGTTACTACAACAATTACAACAAGTCTCAGCCTCGCCATTTTTGTAGAGCTTGTAAAAGACACTGGACTAAAGGTGGAACTCTACGCAATGTTCCTGTTGGTGGTGGCAGAAAGAATAAGAGGGTCAAAAAATCAACCACCACACCAGTTACTTCTTCCACCACCACCACCGCCGCCGCAGCCGCAGCCGCCACAGCAACTACTGCTTGCACCACCTCAATTCAAACACCTGATCTTCAAAATATGATGATGATGGACACAAGAGACTTATTAGAAAGCAAAGATTTTGGCATGTTTACTACTACTTCTTCAACTTTACCTATTCCTCATCAGAATCAAAGCTTGCTCTTCCCCTTTTCAACCTCCTCAAGCTCTTTTGACACAACCACTTGTTCATCTTCCAATGTTTATTACTATGGACAAGAGTTTAAAACAATGGAGGAACAGGAACAGGAAGATGAACCTATAATTCCCAACACAAAGCCATGGGAGACACCGATACCAATACCAATACCGATACCAACATCATTACCATTACCAGCAACAAGTGGTGGCATGGAAGCTTCAAAGTATTGGAACTGGGAAGACATTGATTCATTGGTATCTGCTGATTTAAAGGATCCTTATTGGGATGATTCTGATATCAAACCATGA 840 0.4107 MGLSSKQVISSTGLDWKQTLLESQDLELPKPHHLMRKQQQSPQQQSAEHLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVKKSTTTPVTSSTTTTAAAAAAATATTACTTSIQTPDLQNMMMMDTRDLLESKDFGMFTTTSSTLPIPHQNQSLLFPFSTSSSSFDTTTCSSSNVYYYGQEFKTMEEQEQEDEPIIPNTKPWETPIPIPIPIPTSLPLPATSGGMEASKYWNWEDIDSLVSADLKDPYWDDSDIKP 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02440 279 ProSitePatterns Zinc finger Dof-type signature. 52 88 IPR003851 GO:0003677|GO:0006355
Vifa6g02440 279 MobiDBLite consensus disorder prediction 91 112 - -
Vifa6g02440 279 Pfam Dof domain, zinc finger 49 102 IPR003851 GO:0003677|GO:0006355
Vifa6g02440 279 ProSiteProfiles Zinc finger Dof-type profile. 50 104 IPR003851 GO:0003677|GO:0006355
Vifa6g02440 279 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 38 193 IPR045174 GO:0003700|GO:0006355
Vifa6g02440 279 MobiDBLite consensus disorder prediction 27 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02440 Vifa-Chr6 848302348 848303268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02440 38 121 C2C2-Dof Transcription Factor Family AT1G51700 59.524 1.62e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa6g02440 zf-Dof 1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02440 - - mtr:25493206 343.199