Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02431 ATGGACAGCACAGATTCATCTTCATGCTCTCAGCATCCTCATCTCCCACCAGGCTTTCGTTTCCACCCAACCGATGAAGAACTTGTTGTTCATTATCTCAAGAGAAAAGCTGCATCTGCACCTCTTCCTGTAGCTATCATAGCAGAGATTGACCTCTACAAATTCGACCCTTGGGAACTACCAAGTAAAGCAACCTTTGGGGAACAAGAGTGGTATTTTTTCAGTCCAAGAGATAGGAAATACCCAAATGGGGCAAGGCCTAATAGGGCTGCTACATCTGGGTATTGGAAAGCTACTGGAACTGATAAGCCTATATTAACATGTGATGGCCATGTGAAAGTTGGAGTTAAGAAAGCACTTGTTTTTTATGGAGGGAAGCCACCAAAAGGAGTTAAAACTAATTGGATTATGCATGAGTATAGGTTGATTACTGATCATAACAATAATAGTAGTTCCTATAATGCAGCATCAAAAGCTCCTTCTCTATCTGTTGTTGATCATCCTCCACACAATAATAAGAAGAACTCTCTCAGGCTTGATGATTGGGTTTTGTGCCGAATATACAAGAAAAGCATCAGCAGCACTATGCCAAGGCCACCTCTAATGGATCAATACGATAAAGACCTTTCAATGGAACAAACATATAACATGCAACATAACTCTAAACCTCCATCATCAAGAAGCACAAGTTATGGACTTGAAAATGATGACAATTTCTTTGATGCAATTTTAGCATCTCAACATCATCAAGGAATGCAAAATTGTGACATAAACTCAAAGGGTGATGATAATAATAACAATAACAGTGATACGTTCCCTATGAAACGTGCACTAAATGGATCATCATCACAGTTTTGGAATGAAACAGGCTCACCAGGGTCATCTTCTTCAAGTAAACGATTCCATGGAGATCTTAATAGTGGAATAAGCAGTAATGCTGAGGAAAATAATTCATTTGTTTCTCTTCTTAGCCAGCTTCCACCAAATGCAACGTTTCATCAAAACTCTATTCTTGGATCTGTTGGAGATGGTGTAATGAGGCAACAATTTCAACTTCCAGATATAAATTGGAACTAA 1077 0.3881 MDSTDSSSCSQHPHLPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIAEIDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTCDGHVKVGVKKALVFYGGKPPKGVKTNWIMHEYRLITDHNNNSSSYNAASKAPSLSVVDHPPHNNKKNSLRLDDWVLCRIYKKSISSTMPRPPLMDQYDKDLSMEQTYNMQHNSKPPSSRSTSYGLENDDNFFDAILASQHHQGMQNCDINSKGDDNNNNNSDTFPMKRALNGSSSQFWNETGSPGSSSSSKRFHGDLNSGISSNAEENNSFVSLLSQLPPNATFHQNSILGSVGDGVMRQQFQLPDINWN 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02431 358 MobiDBLite consensus disorder prediction 151 173 - -
Vifa6g02431 358 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Vifa6g02431 358 ProSiteProfiles NAC domain profile. 15 190 IPR003441 GO:0003677|GO:0006355
Vifa6g02431 358 PANTHER NAC TRANSCRIPTION FACTOR 56 15 234 - -
Vifa6g02431 358 MobiDBLite consensus disorder prediction 1 20 - -
Vifa6g02431 358 SUPERFAMILY NAC domain 10 190 IPR036093 GO:0003677|GO:0006355
Vifa6g02431 358 Gene3D NAC domain 24 193 IPR036093 GO:0003677|GO:0006355
Vifa6g02431 358 FunFam NAC transcription factor 56 24 195 - -
Vifa6g02431 358 MobiDBLite consensus disorder prediction 251 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02431 Vifa-Chr6 846790325 846791691 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02431 5 358 NAC Transcription Factor Family AT1G61110 53.333 8.10e-113 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa6g02431 NAM 3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02431 - - gmx:100797132 489.189