Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02430 ATGGATAATCTAATATTAAAGATGAGGAGTTTCTACTACTCTATGGTGCTTTTACTTTTTGTACTATCTTTTAACCCTTCTGTTTCATCTAGATCATCATCACATAGGCCCTATATTGGTGGAAGAAAATTGAGAAGCTCTGGTGATAATGGTAGTGATCTTGTCACTGATTTGCCTGGACAACCTCATGTAGATTTTCAACACTTTGCTGGTTATGTCACTGTCAATGAAACCAATGGAAGAGCACTCTTTTATTGGTTTTATGAAGCTATGACCAAACCAGAAGACAAACCATTGGTACTATGGCTTAATGGAGGACCTGGGTGCTCATCTGTGGGATATGGAGCAACACAAGAGATTGGTCCATTTTTAGTGGATAATAATAATGATGGACAAGGTCTTAAATTTAATAACTTCTCATGGAACAAAGAAGCCAATATGTTATTCCTAGAATCTCCTGTCGGAGTGGGCTTTTCCTACTCAAACACAACCACTGATTATCAACAATTGGGTGATGACTTCACAGCTAATGATGCTTACAATTTTCTACACAATTGGTTCCTTAAGTTTCCATCATATAGAACCAAAACATTTTACATAGCAGGAGAAAGCTATGCAGGAAAGTATGTACCAGAACTTGCTGAACTTATCCATGATAGGAACAAGGACCCATCTCTTTACATCGATCTCAAGGGAATTTTGCTAGGTAACCCTGAAACATCTGATGCTGAGGATTGGATGGGACTAGTTGATTATGCTTGGAGTCATGCTGTGATATCTGATGAAACACACAAAACAATCAAAACAAGTTGTGATTTTAACAGTAGTGATCCATGGAAGAATGAAGATTGTGATCAAGCTGTGGATGAAGTGCTTAAACAATATCACGAAATTGATATCTATAGTCTCTATACTTCTGTCTGTTTTGCAACTACAGCAGGTTCTAATGATCAATCAATGCAAACTTCAACTAAACGTTCATCTAAAATGATGCCTAGAATGATGGGTGGTTATGATCCATGCTTGGATGATTATGCTAAAGCTTTTTATAATAGACCTGATGTTCAGAAGGCCCTTCATGCTAGTGATGGTCACAATCTAAAGAATTGGACTATTTGCAACAACAAGATATTCAATGACTGGGGAGATTCAAAGCCATCAGTTATCCCAATTTACAAGAAACTTATATCAGCGGGACTTAGGATTTGGGTTTACAGTGGAGACACAGATGGTAGAGTACCAGTTCTATCAACTAGGTACAGCTTAAGTACTCTAGCTTTGCCTGTCACAAAACCATGGAGACCTTGGTACCATGAAAACGAGGTAAGTGGATGGTACGAAGAATATGAAGGGCTTACATTTGCAACGTTTAGAGGAGCTGGTCATGCAGTTCCATGTTTTAAACCAAGCAACTCACTTGCATTTTTCACCTCATTTCTACATGGAGAATCACCACCTTCTACAAAATAA 1470 0.3803 MDNLILKMRSFYYSMVLLLFVLSFNPSVSSRSSSHRPYIGGRKLRSSGDNGSDLVTDLPGQPHVDFQHFAGYVTVNETNGRALFYWFYEAMTKPEDKPLVLWLNGGPGCSSVGYGATQEIGPFLVDNNNDGQGLKFNNFSWNKEANMLFLESPVGVGFSYSNTTTDYQQLGDDFTANDAYNFLHNWFLKFPSYRTKTFYIAGESYAGKYVPELAELIHDRNKDPSLYIDLKGILLGNPETSDAEDWMGLVDYAWSHAVISDETHKTIKTSCDFNSSDPWKNEDCDQAVDEVLKQYHEIDIYSLYTSVCFATTAGSNDQSMQTSTKRSSKMMPRMMGGYDPCLDDYAKAFYNRPDVQKALHASDGHNLKNWTICNNKIFNDWGDSKPSVIPIYKKLISAGLRIWVYSGDTDGRVPVLSTRYSLSTLALPVTKPWRPWYHENEVSGWYEEYEGLTFATFRGAGHAVPCFKPSNSLAFFTSFLHGESPPSTK 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02430 489 Pfam Serine carboxypeptidase 60 482 IPR001563 GO:0004185|GO:0006508
Vifa6g02430 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 137 149 IPR001563 GO:0004185|GO:0006508
Vifa6g02430 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 186 211 IPR001563 GO:0004185|GO:0006508
Vifa6g02430 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 452 465 IPR001563 GO:0004185|GO:0006508
Vifa6g02430 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 150 160 IPR001563 GO:0004185|GO:0006508
Vifa6g02430 489 ProSitePatterns Serine carboxypeptidases, serine active site. 200 207 IPR018202 GO:0004185
Vifa6g02430 489 FunFam Carboxypeptidase 49 310 - -
Vifa6g02430 489 Gene3D - 341 377 - -
Vifa6g02430 489 SUPERFAMILY alpha/beta-Hydrolases 50 483 IPR029058 -
Vifa6g02430 489 Gene3D alpha/beta hydrolase 50 310 IPR029058 -
Vifa6g02430 489 MobiDBLite consensus disorder prediction 28 54 - -
Vifa6g02430 489 FunFam Carboxypeptidase 388 482 - -
Vifa6g02430 489 Gene3D - 388 482 - -
Vifa6g02430 489 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 54 469 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02430 Vifa-Chr6 846347352 846350440 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02430 346 483 Calmodulin-binding Proteins AT2G22960 33.813 6.51e-17 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02430 K16297 - gmx:100815993 887.1