Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02404 ATGAATGACTTGTTTTCAAATTCCTTCAAAAAATACACTGATTTGAAGGAACAAGCTTACATTGACGATGTAGAAGCAGGGAATAGAGAAAGTGTGAATCTGGATAAATTCTTCGAAGATGTCGAGAATATAAAACAAGACATGAAAGCAATTGAAATGTTGTATAGGAAATTACAAGAAGCTAATGAAGAGAGTAAAACCGTGCACAATGCTAAAACAATGAAAGATGTTCGAGCCCGAATGGACAAAGATGTAGAACTAGTTCTTAAACGTGTTAAAGTAATTAAAGGAAAACTCGAAGCGTTGGATCGGTCGAATGCGGTTAATAGAAAGATTGTAGGGTGTGGTCCAGGTTCATCGGCGGATAGAACTAGAACTTCGGTAGTTAGCGGATTAGGGAAGAAACTAAAAGATATGATGGATGAGTTTCAAGGTTTGAGAGCAAGAATGCAACATGAGTATAAGGAAACGGTGGAAAGAAGATATTTTACAATAACGGGAGAGAAAGCAGATGAAGAAACTATAGAGAATTTGATATCAAGTGGAGAAAGTGAAAATTTTATGCAGAGGGCAATTCAAGAACAAGGTAGGGGTCAAATAATGGATACAATATCAGAAATTCAAGAAAGACATGGTGCTGTTAAGGAAATAGAAAAGAATTTGGTTGAGTTGCATCAAGTGTTTTTGGATATGGCTGCTCTAGTAGAGTCTCAAGGGCAACAACTTAATAATATTGAGAGTCATGTTGCACATGCTAGTTCTTTTGTAAGAAGAGGGACAGAACAACTTCAGGAAGCTAGAGTGCAACAAAAGAGTTCTAGGAAGTGGACATGTTATGCTATAATTCTTGGTATTGTTCTTGTTATTGTGCTCTTGTTTCCTCTCTTGACATCACTTATACCTCATTTGTTAAGATGA 918 0.3638 MNDLFSNSFKKYTDLKEQAYIDDVEAGNRESVNLDKFFEDVENIKQDMKAIEMLYRKLQEANEESKTVHNAKTMKDVRARMDKDVELVLKRVKVIKGKLEALDRSNAVNRKIVGCGPGSSADRTRTSVVSGLGKKLKDMMDEFQGLRARMQHEYKETVERRYFTITGEKADEETIENLISSGESENFMQRAIQEQGRGQIMDTISEIQERHGAVKEIEKNLVELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTEQLQEARVQQKSSRKWTCYAIILGIVLVIVLLFPLLTSLIPHLLR 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02404 305 CDD SNARE_syntaxin1-like 203 265 - -
Vifa6g02404 305 SMART SynN_4 29 155 IPR006011 GO:0016020
Vifa6g02404 305 PANTHER SYNTAXIN 43 287 IPR045242 -
Vifa6g02404 305 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 31 161 - -
Vifa6g02404 305 Coils Coil 41 64 - -
Vifa6g02404 305 SUPERFAMILY t-snare proteins 33 259 IPR010989 GO:0016020|GO:0016192
Vifa6g02404 305 FunFam Syntaxin 132 197 297 - -
Vifa6g02404 305 Pfam Syntaxin 36 239 IPR006011 GO:0016020
Vifa6g02404 305 SMART tSNARE_6 199 266 IPR000727 -
Vifa6g02404 305 Gene3D - 34 161 - -
Vifa6g02404 305 CDD SynN 34 191 IPR006011 GO:0016020
Vifa6g02404 305 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vifa6g02404 305 Gene3D - 192 296 - -
Vifa6g02404 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Vifa6g02404 305 Pfam SNARE domain 241 292 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02404 Vifa-Chr6 836184569 836185486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02404 1 304 SNARE and Associated Proteins AT1G61290 76.316 5.71e-175 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02404 K08486 - gmx:100818999 486.493