Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02373 ATGGGTGATGAAGAGTTAGATAGAGAAACCAAACTGGCCGGAGTACCTACCGGAGCTTCCCGTCTCCGGCGAGCTGTGGAACTCATTTCTTCATTACTCTCTCTTTCCCTGTCGATTAGAGTCTTCGCCGGAAAATGGCAGCTTATTCGGAACAAGCTTGAGGAGCTTCATTCGGGTTTAATCGCTGCCGAGAATTGCGATTCCGGTGAGAATCCGTCGCTATCGAGGTTAGTGACTTCGATAGTTGCGACTGTAAATGAGTGTCACGATCTAGGTCAGCGTTGCGTCGATGTTGCGTATAGTGGGAAGTTGTTGATGCAGAGTGATTTGGACGTAGCGTTTGCGAAACTTGATGGGGTTGCGAAGAAGCTTTCGGAGATATATAAAACGGGGATTTTGACAAATGGGTTTGCGCTAGTTGTTTCAAAACCGAGTCTTGGGGCTTGTAAGGAGGATATGAGGTTTTATGTGAGAGATATTTTGACGAGGATGAAGATTGGTGATTTGGGTATGAAGAAAATGGCTTTGAGGAATCTTCTTGAGGTTGTGGTTGAGGATGAGAAGTATGTGAAGGTGATTGTTGTGGATGTTGGTGATGTTGTTCATGTGCTTGTGGGGTTTTTGGGTTCTGGTGAGGTGGAGATTCAGGAAGAGAGTGCTAAGGTTGTTTTTGTGGTGGCTGGTTTTGATTCATATAAAGGGGTTTTGGTTAGTGCTGGTGTGATTGCACCGTTGATTCGGGTTTTGGATTGTGGGAGTGAATTGGGAAAAGTTGCGGCCGCGAGGTGTTTGATGAAATTGACCGAGAATTCGGATAATGCTTGGGCTGTTTCTGCTCATGGTGGTGTTACTGTGTTGTTGAATATTTGTGGGAATGATGATTGTAAAGGGGATTTGGTTGGTCCAGCTTGTGGGGTTTTGAGAAATCTTGTTGGTGTTGAGGAGGTTAAGAGGTTCATGGTTGAAGAGGATGCTGTGGCGACGTTTATAAGGCTTGTGAAATCGAAGGAGGAAGCGATTCAGGTGAATTCCATAGGATTCATTCAGAATATTGCCTTTGGAGATGAGTTGATTAGGGAAAAGGTGATTAGAGACGGTGGAATCCGAGCTTTGTTACGTGTTTTGGATCCGAAATGGTCCTATTCTTTGAAAACAAAGGTAGTAGCAATGAGGGCTATTGAAAGTTTGTGTTTTACTTCATCCAGCTCTAGTTGGCATTAA 1221 0.4447 MGDEELDRETKLAGVPTGASRLRRAVELISSLLSLSLSIRVFAGKWQLIRNKLEELHSGLIAAENCDSGENPSLSRLVTSIVATVNECHDLGQRCVDVAYSGKLLMQSDLDVAFAKLDGVAKKLSEIYKTGILTNGFALVVSKPSLGACKEDMRFYVRDILTRMKIGDLGMKKMALRNLLEVVVEDEKYVKVIVVDVGDVVHVLVGFLGSGEVEIQEESAKVVFVVAGFDSYKGVLVSAGVIAPLIRVLDCGSELGKVAAARCLMKLTENSDNAWAVSAHGGVTVLLNICGNDDCKGDLVGPACGVLRNLVGVEEVKRFMVEEDAVATFIRLVKSKEEAIQVNSIGFIQNIAFGDELIREKVIRDGGIRALLRVLDPKWSYSLKTKVVAMRAIESLCFTSSSSSWH 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02373 406 SMART arm_5 186 228 IPR000225 GO:0005515
Vifa6g02373 406 SMART arm_5 355 398 IPR000225 GO:0005515
Vifa6g02373 406 SMART arm_5 229 269 IPR000225 GO:0005515
Vifa6g02373 406 SMART arm_5 270 312 IPR000225 GO:0005515
Vifa6g02373 406 SMART arm_5 313 353 IPR000225 GO:0005515
Vifa6g02373 406 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 8 401 - -
Vifa6g02373 406 SUPERFAMILY ARM repeat 159 400 IPR016024 -
Vifa6g02373 406 Gene3D - 164 405 IPR011989 -
Vifa6g02373 406 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 281 325 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02373 179 363 U-box Gene Family AT5G67340 29.897 1.75e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02373 - - psat:127100726 709.909