Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02366 ATGGGAAGAGTGCCTTGTTGTGAAAAGAATGGTCTCAAGAGAGGACCATGGACACAAGAGGAAGACCAAAAGCTCATTGATTATATTCACAAACATGGCTATGGAAACTGGAGATTACTCCCAAAGAAGGCTGGGTTACAAAGATGTGGAAAGAGTTGTCGTCTTCGTTGGACAAACTATCTGCGACCAGATATAAAGCGAGGCCGATTCTCTTTTGAAGAAGAAGAAACCATAATTCAACTACATAGCATGCTCGGCAACAAATGGTCTGCAATTGCTTCTAGGCTACCAGGAAGAACAGACAATGAAATCAAGAATTATTGGAACACTCACATTAGAAAAAGACTCTTGAGGATGGGAATTGATCCAGTGACACATAATCCAAGACTTGATCTTTTGGACCTTTCTTCTATCATAAATTCATCTCTTTATGCTTCTGCTTCATTGATGAACCCTGAGATTCTAAAGTTTGCTGCATCACTCTTCCCCTCTCAAGAGACTCACCAAATTATCTCACACTTGGTTCAAACTCAAATTCAGGACTCCATTCATCAAGAAGCTTATAACAAACTATTGAATCCACCTTGTGATAATTCAATGCCTTTCACTCAATCAAACTTGGTTGAACCCAATGAGAATCTATATTCATCATCATTTTTACCTGAATCTGGCTTCCAACAACAACACGATTTGCATTGCAATGGAATTGCTTCAAGTACTACTAGAGATGATTTTGCTAATCAATTACCAAGCTATGATTACATGAGTTCTGACTATCATGGAAATGATCTAATTATGGAACCTCACATATCAGAAACCTCAACATTTCATTCCAATAACACCAACCGGAACTTCAATTTCGCTTCGATTCTATCTACGCCTTCATCAAGTCCCGGACGGTTGAATTCGAATTCGACATATATCAACGGAACCAGCATTGAAGATGAGACAGAAAGCTATGTTAGCAACAACATGTTTGAATTTCAAGTTTCAGATATCTTAGGTGTGAATGAGTTCATGTAA 1023 0.3832 MGRVPCCEKNGLKRGPWTQEEDQKLIDYIHKHGYGNWRLLPKKAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSMLGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHNPRLDLLDLSSIINSSLYASASLMNPEILKFAASLFPSQETHQIISHLVQTQIQDSIHQEAYNKLLNPPCDNSMPFTQSNLVEPNENLYSSSFLPESGFQQQHDLHCNGIASSTTRDDFANQLPSYDYMSSDYHGNDLIMEPHISETSTFHSNNTNRNFNFASILSTPSSSPGRLNSNSTYINGTSIEDETESYVSNNMFEFQVSDILGVNEFM 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02366 340 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vifa6g02366 340 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vifa6g02366 340 CDD SANT 69 112 IPR001005 -
Vifa6g02366 340 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 243 - -
Vifa6g02366 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vifa6g02366 340 CDD SANT 16 61 IPR001005 -
Vifa6g02366 340 FunFam Transcription factor MYB39 69 130 - -
Vifa6g02366 340 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vifa6g02366 340 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vifa6g02366 340 FunFam MYB-related transcription factor 13 66 - -
Vifa6g02366 340 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vifa6g02366 340 SMART sant 13 63 IPR001005 -
Vifa6g02366 340 SMART sant 66 114 IPR001005 -
Vifa6g02366 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vifa6g02366 340 Gene3D - 14 66 - -
Vifa6g02366 340 Gene3D - 69 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02366 Vifa-Chr6 819079136 819080458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02366 1 340 MYB Transcription Factor Family AT4G21440 51.872 2.23e-110 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa6g02366 Myb_DNA-binding 8.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02366 K09422 - gmx:778071 431.024