Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02362 ATGAAGAAAGAATCAGCATCGGCGAACGAGGAGGTTCTACCGGACCATCTCCGGTGCGGCCGAACCGACGGGAAGCAATGGCGGTGCAAGCGGAGAGTGATGGATGATCTGAAGCTCTGCGAGATTCACTACCTTCAAGGAAAGCATCGTCAGTACAGAGAGAAAGTTCCAGAGTCTCTGAAGCTTCAGAGGAAGCGGAAAAACACCGAAGAAACTGCTGTTATGGATAATGCGGAAACCGAAACAGCTAAGGCGGATAGTAAGTTCAAAATGGAGCTGAGGAAGATCAAGAAGAAGAAGCGGAAGTTCTCCGAGGGTTCCGAATCGTTAACTGATACTCCTTCTGCATCTGCATCTGTTCCTGCTGCTCTTTCTGTTAGGAAGCGAACAATGAAGCAATGTGACACGCAATTGGATCTTATTAGGATGGTTCTGGAGAGAGAAGTTGAGAAGAGAAAAGGGAACACTAGCGGCAGCAACAAGAAGAAGAAGAAAAAGAAGAAAAAGGAGATTAAAACAGAAGAAGTTGAATTAAGGAAGGAGTTACCAAATGGGGTTATGGAAATATCTCCGGCTTTAATGCCACATGATTATAACAATGTAAGTTCGCATTGCGATGTGAAAGTCGGTGCTGAGCATAAGATTGTAGCTGTAACGCCGCGTTACTTCAGGTCCAAGAATATTGATAGGGTGGCTGTTGGCAAGTTGCAGGTTGTGCCTAATGGATCAAACTTGAAGAAGGGGAATACTAAGGGGAAGAAGTGTCATTGGTGCCAGAGAAGTGATTCTGTGAATCTCGTCCAGTGTTCTAGCTGTCAAAAGGAGTTTTTCTGCTTTGGATGCATAAGAGAACAGTATTTGGACACACGAAGCGAAGTGAAGAAGGCTTGTCCAGTTTGTCAAAGAACTTGCACATGTAAGGACTGTTTGGGAAGTCAATGTAATGACAGTGAAAGTAAGCCTTGTTTGACCGGTAAAATTAGAGTTGATAGAATACTCCATTATCATTATTTGATCTGCATGCTCCTTCCAGTACTAAAGCGAATAAGTGAAGACCGGGAAACTGAGCTAGAAATAAAAGCAAAATTTAAAGGGAAAAATATTTCTGATATTCAAATCAAGCAGGTTGAATTTGGCTACAATGAAAATATTAATTGCAATCACTGCAGAACACCTGTCCTGGATCTCCATAGAAGCTGTGTTAGTTGTTCGTATAGCCTATGCTTAAGTTGTTGTGAGAAATTATGTTCCAGAAGAACTTCTGGAGAAATTAACTCATCTATGTTGAAGCTACCTGATCCGATGGACACCTGTGTTGACAATGAGAGCCATATTTTGGATCAGAATGACATCTCTAGTGATGATTTAATTGGTATTTCAACATTGCCCGAGTGGACAAAGTGTAATGATATTGAAAAAGTATCATGCCCTCCTATGGAGCTTGGTGGTTGTGGTACAGGTATGCTTGATTTAAGATGCATTTTTCCCCCGACTTTGCTCAAAGAGATGGAAGTAAAGGCAGAAGAAATTGTTTGCAGCTATGACTTTCCGGAAACTTTGGATAAAAGTTCAAGCTGCTCACTGTGTTTTGACACTGACCTCAATACTAACCGATATAACCAGTTGCAGAAATCAGCTGAGAGAGAAGATTCATCGGACAATTGCTTGTTTTGTCCCACAGTTTTGGACATCAGTGGTGATAACTTTGAGCACTTTCAGAAACACTGGGGAAAAGGCCATCCCATAGTGGTCCAAGATGTGCTCCAGAGTTCATCAAACCTCAGTTGGAATCCACTGTTCATGTTCTGTACTTATCTCGAGCAGAGCATTACGAAGTATGAGAATAATAAAGAGTTACTTGAATCCTGTTTGGATTGGTGTGAGGTGGAAATAAACATTAGGCAGTATTTTACTGGGTCTCTCAAAAGTCGTCCTCAGAGAAACACTTGGCATGAGATGCTGAAACTGAAAGGATGGCTGTCTTCCCAAGTATTTAAAGAGCAGTTTCCAGCTCATTTTTCTGAAGTAATTGATGCTCTACCAGTTCAAGAATACATGAATCCTGTGTCTGGTCTTCTGAATTTAGCTGCAAATTTGCAACACGGGAGTGCGAAACACGACATTGGGCCATATGTTTATATTTCGTACGGCTGTGATGACATAGAAGCTGATTCTGTGACAAAACTCTGCTGTGACTCAAATGATGTGGTTAATATTATGACACATTCTGCGGATGTCCCTCTCTCTACAGAACAACTTGCAAAAATAAGGAAATTGCTGAAGAAGCACAAAGCTCTGTGTCAAATGGAGTATGTTACTACTGAGCAGTTACCGGGACAGAATGTGAAAGGATTATCACATGCTGAAGAAACGGAACAAAAAGGTTTGCGGAGTATGGGGAAAGAAGGAATGGAATTTTTCAGGAGAGTCGATAGAACATCTTGCATCTCAACTGAAGCTAAAAAAGCTTCTACTCAGAGTATAGACAGCAATATTTCCCAAGATGGAGAACGCAGTATCATTTCTGATTCTGAACCCTCTCTTCATGGGACTGTTCATACCACCAATTTGTCAGCACACGATAATCCTAGAAGTCCCTCTGGAAGCTCCAACAGTTGTAAGAAAAAGTTTACCGAGCATTCAGGCGCCCAGTGGGATGTCTTTCGTAGACAAGATGTGCCAAAGCTCATAGAATACATTAAAAGACACTATGATGAACTTACTTATACCCATGACTCTCACAAGAAGATGGTTCATCCAATTCTAGATCAGAGCATTTTTCTTGACAGCACTCACAAAATGAGACTGAAGGAGGAGTTTAAGATTGAACCATGGACTTTCCAGCAACATGTTGGAGAAGCTGTCATCATTCCTGCTGGTTGTCCATACCAGATAAGGAATTCTAAGTGTTGTGTCCACGCGGTATTGGAATTTGTGTCCCCTGAAAATGTAACCGAGTGTATCCAGTTGATTGATGAAGTCAGACAGTTACCTGAAGACCATAAAGCAAAAGTAGACAAGCTGGAGGTGAAGAAAATGGCACTACACAGCATGAGTACAGCAATTAAAGAAATACGCCAGCTTACATGCAAAACATGA 3099 0.4159 MKKESASANEEVLPDHLRCGRTDGKQWRCKRRVMDDLKLCEIHYLQGKHRQYREKVPESLKLQRKRKNTEETAVMDNAETETAKADSKFKMELRKIKKKKRKFSEGSESLTDTPSASASVPAALSVRKRTMKQCDTQLDLIRMVLEREVEKRKGNTSGSNKKKKKKKKKEIKTEEVELRKELPNGVMEISPALMPHDYNNVSSHCDVKVGAEHKIVAVTPRYFRSKNIDRVAVGKLQVVPNGSNLKKGNTKGKKCHWCQRSDSVNLVQCSSCQKEFFCFGCIREQYLDTRSEVKKACPVCQRTCTCKDCLGSQCNDSESKPCLTGKIRVDRILHYHYLICMLLPVLKRISEDRETELEIKAKFKGKNISDIQIKQVEFGYNENINCNHCRTPVLDLHRSCVSCSYSLCLSCCEKLCSRRTSGEINSSMLKLPDPMDTCVDNESHILDQNDISSDDLIGISTLPEWTKCNDIEKVSCPPMELGGCGTGMLDLRCIFPPTLLKEMEVKAEEIVCSYDFPETLDKSSSCSLCFDTDLNTNRYNQLQKSAEREDSSDNCLFCPTVLDISGDNFEHFQKHWGKGHPIVVQDVLQSSSNLSWNPLFMFCTYLEQSITKYENNKELLESCLDWCEVEINIRQYFTGSLKSRPQRNTWHEMLKLKGWLSSQVFKEQFPAHFSEVIDALPVQEYMNPVSGLLNLAANLQHGSAKHDIGPYVYISYGCDDIEADSVTKLCCDSNDVVNIMTHSADVPLSTEQLAKIRKLLKKHKALCQMEYVTTEQLPGQNVKGLSHAEETEQKGLRSMGKEGMEFFRRVDRTSCISTEAKKASTQSIDSNISQDGERSIISDSEPSLHGTVHTTNLSAHDNPRSPSGSSNSCKKKFTEHSGAQWDVFRRQDVPKLIEYIKRHYDELTYTHDSHKKMVHPILDQSIFLDSTHKMRLKEEFKIEPWTFQQHVGEAVIIPAGCPYQIRNSKCCVHAVLEFVSPENVTECIQLIDEVRQLPEDHKAKVDKLEVKKMALHSMSTAIKEIRQLTCKT 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02362 1032 ProSiteProfiles WRC domain profile. 13 59 IPR014977 -
Vifa6g02362 1032 MobiDBLite consensus disorder prediction 787 802 - -
Vifa6g02362 1032 ProSiteProfiles Zinc finger RING-type profile. 255 301 IPR001841 -
Vifa6g02362 1032 Pfam WRC 14 55 IPR014977 -
Vifa6g02362 1032 MobiDBLite consensus disorder prediction 150 172 - -
Vifa6g02362 1032 MobiDBLite consensus disorder prediction 818 876 - -
Vifa6g02362 1032 MobiDBLite consensus disorder prediction 780 802 - -
Vifa6g02362 1032 ProSiteProfiles JmjC domain profile. 688 995 IPR003347 -
Vifa6g02362 1032 MobiDBLite consensus disorder prediction 97 121 - -
Vifa6g02362 1032 Pfam JmjC domain, hydroxylase 881 973 IPR003347 -
Vifa6g02362 1032 Gene3D Cupin 559 1004 - -
Vifa6g02362 1032 SMART cupin_9 669 995 IPR003347 -
Vifa6g02362 1032 Coils Coil 161 181 - -
Vifa6g02362 1032 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 15 1030 IPR045109 GO:0032454|GO:0033169
Vifa6g02362 1032 SUPERFAMILY Clavaminate synthase-like 568 1022 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02362 Vifa-Chr6 818333779 818339722 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02362 8 50 GRF Transcription Factor Family AT4G37740 48.837 1.53e-06 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vifa6g02362 JmjC 2.2e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02362 K15601 - gmx:100810673 1417.91