Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02360 ATGGCGTCCTCACTACCACACTTAGACGACGATTCCGTCTCCCCTTCCCCTCGCTCCGATCACTTCCAAGACGCTCCGCCGCGTGTCCGCTTCATGTGTAGCTTCGGCGGCAAGATCCTCCCCCGTCCCTCCGACAATCAGCTCCGTTACGTCGGCGGCGACACCCGAATCGTCGCCGTTAATCGCTCTATTCCATTCTCCGCCTTAGTCCACAAACTCTCCAAACTCTGTGGCATGAGCAACATAACCGCAAAGTACCAACTTCCAAACGAAGACCTAGACGCGTTGATCACCGTTACAACAGACGAAGACGTGGAGAACATGATAGACGAGTACGACCGCGTCTCACAGAATGAAAACCCACGAGCGGCTCGCCTTCGCGTCTTCCTCTTCCCTGAAGGCGAAGATTCTCGAGCCAACAGTATAAGCTCGCTGTTAAACGGCTCAACCAAAAGAGAAAACTGGTTCATGGACGCTTTAAACGGTGGCGTTTCAGGACTCGAGCGAGGTCGCTCAGAAGCTTCTTCTATGCTTTCTGAAGTACCCGATTATTTATTCGGGTTGGATAATAACTCCGAAGAAACAAACCAAAACCAAAACCTAAACCTAAACCTCCGTGAATCACGACCTAAGGAACGTCACCTTCTTCAACAAGATAACGTTTCGAATTCGGATCCGGGTTCTCCTGCTCCGGTTGTTTCTTCACCGTTTTGTTCAACTTCATCTGCGTTGAGTGTTCCTTCTATCCCGAATCTTCCACCGGTTAAAACCAAACTCGAAAACCCGGTTTCTGATTTCAGAGAAAATCAAAACGAAACGGTTTTTCAACCGCAACTGAAACAGAATCTTTATCAGATTAACCCTGCAGTACACTACCCCCACCCCCAACCACAAGCACAAGCTTCACATGCACAAGAAGCTGCATATTCGGGTCATCATGCACAACCGGTTCCAGTTTACTATATTTCCGGTTCGGTTCAGCCCGGAAATATGCCGATGCAACAGGTTCATTATCCATTCGTTCAACAACCTTATCATGCAGTTATGCAACCTCAGGTTCCGATTGGGTATCATCATATGGTTCCGGGTTCGGGTCAAGTGTATGGTGCGGGGATGAGGCATGTGGCCCCTGTGCAGCCCTACAGTCCCACGGCTCCGGTGGTTCGTGACGGTTTAAAACAGCAAGTGTATCAAGGTGTGCCGAACCCCAGTCCGGTTCCGGTTTACCATCAGATGGCAGTGACGGGTGGGGATGAACCGCAAAGAAGTGGAACGGAGTTTGGAATGGGTCGGGGCACCAACCCGCCGAATAATTGA 1317 0.5042 MASSLPHLDDDSVSPSPRSDHFQDAPPRVRFMCSFGGKILPRPSDNQLRYVGGDTRIVAVNRSIPFSALVHKLSKLCGMSNITAKYQLPNEDLDALITVTTDEDVENMIDEYDRVSQNENPRAARLRVFLFPEGEDSRANSISSLLNGSTKRENWFMDALNGGVSGLERGRSEASSMLSEVPDYLFGLDNNSEETNQNQNLNLNLRESRPKERHLLQQDNVSNSDPGSPAPVVSSPFCSTSSALSVPSIPNLPPVKTKLENPVSDFRENQNETVFQPQLKQNLYQINPAVHYPHPQPQAQASHAQEAAYSGHHAQPVPVYYISGSVQPGNMPMQQVHYPFVQQPYHAVMQPQVPIGYHHMVPGSGQVYGAGMRHVAPVQPYSPTAPVVRDGLKQQVYQGVPNPSPVPVYHQMAVTGGDEPQRSGTEFGMGRGTNPPNN 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02360 438 PANTHER OS05G0427100 PROTEIN-RELATED 11 365 - -
Vifa6g02360 438 CDD PB1_UP2 32 131 - -
Vifa6g02360 438 Pfam PB1 domain 45 132 IPR000270 GO:0005515
Vifa6g02360 438 Gene3D - 49 132 - -
Vifa6g02360 438 MobiDBLite consensus disorder prediction 415 438 - -
Vifa6g02360 438 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 48 133 - -
Vifa6g02360 438 SUPERFAMILY CAD & PB1 domains 44 140 - -
Vifa6g02360 438 SMART PB1_new 43 131 IPR000270 GO:0005515
Vifa6g02360 438 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02360 Vifa-Chr6 817458216 817459620 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02360 24 168 MAP Kinase Kinase Kinase AT5G57610 44.898 6.39e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02360 - - aprc:113858359 582.022