LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa6g02355	ATGAAACTCGGTTGGAATTTCGACACAAACACAGAAACATACATTAATTCATGGAAGGTAACAGAACAAGACCCTTCCAATGGAGACATATCTTTCAAGATGGATTATCAAGGTATCCCAGAGATTTTCCTATGGAACAAAAACAAAAGAATTTACAGAAGTGGACCATGGAATGGTAAAAGATTCAGTGGTGTACCAGAGATGCAACCGGTTACCGATTCGATTCAATTCAGTTTCGTCGAGAACGAACACGAGGTTTACTACACATTCACAATTGGGAAACAGTCCTTATTTTCAAGACTCAGTGTGACTCCATTAGGTGAACTTCAAAGACTGACATTTATAAATAGCAGAAGCTTTTGGAGTAAATTCTGGTATGCACCAAAAGACCAATGTGACCATTACAAAGAGTGTGGCCCGTTTGGTGTATGTGACACAAACGGTTCACCTGTTTGCAGTTGTATAAAAGGGTTTAGACCCAAGAATCATCAAGCATGGAATTTGAGAGATGGATCTGATGGGTGTTTGAGGAACAATGAGCTGGATTGTGAGAGTGACAGGTTTTTGCGTATGGTGAATGTGAAGTTACCTGAGACGAGTAGGGTTTTTGTGAATAGGAGTATGGGGATTTTGGAGTGTGGTGAGATGTGTAAGAGGAATTGTTCTTGTAGTGGTTATGGGAATGTTGAGGTTGTGAATGGTGGAAGTGGTTGTGTTATGTGGGTTGATGAATTGGTTGATATTAGAGTTTATCCTGCTGGGGGTCAAGAGCTTTTTGTCAGATTAGCAGCTTCTGATGTAGATGATGATGTGCTAAGAGAAAGTTCTGACCACAAGACAGCTAAGGCTATAGGCATTGTGGTTGGGGGTGCAGCCATTATATTTCTGGTGTTAGGAATATGTTTCTTGTGGAGGAAGAAAAAGTTACGATGTCTATTGAATTTGAAAGAGAAGAGAGAAAGAAGAGCAGGTTCATTGGAAAGAAGTCAAGATTTGCTTATGACCGACGGAGTCTTTACAAGTAATAGAGAACAAACAAATGAAAATAACATGGATGAACTAGAATTGCCATTCTTTGATTTTAATACCATAACAATAGCTACAAATAATTTTTCTCATGAGAATAAACTTGGACAAGGAGGCTTTGGTATTGTTTACAAAGGTAGGTTGACGGAAGGTCAGGAAATTGCTGTGAAGAGATTATCGAAAAATTCGGGCCAAGGTGTTGAAGAGTTTAAGAATGAGGTCAAGTTGATTGTCAAGCTTCAACATCGAAATCTTGTTCGGCTACTTGGTTGCAGCTTTCAGATGGATGAGAAGATGTTAGTGTATGAGTACATGGAAAATAGAAGCCTTGATGCCATTTTATTTGACAAGACTAAAAAATCCTCACTCGATTGGAAAACGCGCTTCAATATTATATGCGGAATAGCTAGAGGACTTCTTTATCTTCATCAAGATTCAAGGTTTAGGATTATCCATAGAGATCTTAAGGCAAGCAACATTCTACTTGATCGAGAAATGAACCCTAAGATATCCGACTTCGGGATGGCTAGAATTTTTGGCACGGATCAGACAGAGGCGAATACAGTTAGAGTTGTTGGAACATATGGTTATATGTCTCCTGAATATGCTATGGACGGAATCTTCTCGGTGAAATCAGATGTTTTCAGTTTTGGCGTACTTGCGATGGAAATCATAAGTGGAAAAAAGAACCGAGGTTTCTATTCCGCAAGTAAAGAATTGAATCTTCTTGGTCATAGTTGGAAGCTGTGGAAAGAAGGAAATTCTTTGGAGCTAATAGATTCGTCCATAATTGATAATTCATATTTACCATCTGAGGTTCTTAGATGCATACAAGTTGGATTATTATGTGTACAAGAGAGAGCAGAAGATAGACCAACAATGTCTTCAGTGGTTTTGATGTTGAGTAGTGAAACAGCAACAATAGCACAGCCCAAAAACCCTGGATTTTGCCTAGGAAGCATTCCTATTGAAACCGATTCTTCATCAAGTAAACAAGACGAATCTTGCAGCGTGAACCATGTTACTGTCACAATGGTAGATGGCAGATAG	2076	0.3897	MKLGWNFDTNTETYINSWKVTEQDPSNGDISFKMDYQGIPEIFLWNKNKRIYRSGPWNGKRFSGVPEMQPVTDSIQFSFVENEHEVYYTFTIGKQSLFSRLSVTPLGELQRLTFINSRSFWSKFWYAPKDQCDHYKECGPFGVCDTNGSPVCSCIKGFRPKNHQAWNLRDGSDGCLRNNELDCESDRFLRMVNVKLPETSRVFVNRSMGILECGEMCKRNCSCSGYGNVEVVNGGSGCVMWVDELVDIRVYPAGGQELFVRLAASDVDDDVLRESSDHKTAKAIGIVVGGAAIIFLVLGICFLWRKKKLRCLLNLKEKRERRAGSLERSQDLLMTDGVFTSNREQTNENNMDELELPFFDFNTITIATNNFSHENKLGQGGFGIVYKGRLTEGQEIAVKRLSKNSGQGVEEFKNEVKLIVKLQHRNLVRLLGCSFQMDEKMLVYEYMENRSLDAILFDKTKKSSLDWKTRFNIICGIARGLLYLHQDSRFRIIHRDLKASNILLDREMNPKISDFGMARIFGTDQTEANTVRVVGTYGYMSPEYAMDGIFSVKSDVFSFGVLAMEIISGKKNRGFYSASKELNLLGHSWKLWKEGNSLELIDSSIIDNSYLPSEVLRCIQVGLLCVQERAEDRPTMSSVVLMLSSETATIAQPKNPGFCLGSIPIETDSSSSKQDESCSVNHVTVTMVDGR	691

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa6g02355	691	Pfam	PAN-like domain	183	248	IPR003609	-
	Vifa6g02355	691	CDD	PAN_AP_plant	181	263	-	-
	Vifa6g02355	691	ProSiteProfiles	PAN/Apple domain profile.	183	263	IPR003609	-
	Vifa6g02355	691	Pfam	Receptor serine/threonine kinase	327	361	IPR022126	GO:0004674
	Vifa6g02355	691	Pfam	Protein tyrosine and serine/threonine kinase	373	641	IPR001245	GO:0004672\|GO:0006468
	Vifa6g02355	691	Pfam	Domain of unknown function (DUF3403)	645	691	IPR021820	GO:0004674
	Vifa6g02355	691	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	447	651	-	-
	Vifa6g02355	691	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230	337	446	-	-
	Vifa6g02355	691	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	492	504	IPR008271	GO:0004672\|GO:0006468
	Vifa6g02355	691	Gene3D	Transferase(Phosphotransferase) domain 1	447	655	-	-
	Vifa6g02355	691	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	6	670	-	-
	Vifa6g02355	691	SMART	ntp_6	183	262	IPR003609	-
	Vifa6g02355	691	Gene3D	Phosphorylase Kinase; domain 1	344	446	-	-
	Vifa6g02355	691	CDD	STKc_IRAK	377	643	-	-
	Vifa6g02355	691	SUPERFAMILY	Protein kinase-like (PK-like)	349	643	IPR011009	-
	Vifa6g02355	691	ProSitePatterns	Protein kinases ATP-binding region signature.	377	399	IPR017441	GO:0005524
	Vifa6g02355	691	ProSiteProfiles	Protein kinase domain profile.	371	658	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa6g02355	691	Pfam	S-locus glycoprotein domain	52	162	IPR000858	GO:0048544
	Vifa6g02355	691	SMART	serkin_6	371	641	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa6g02355	Vifa-Chr6	816190842	816195826	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa6g02355	359	686	Receptor kinase-like Gene Family	AT4G11530	58.559	1.56e-132	404

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vifa6g02355		PK_Tyr_Ser-Thr	4.9e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa6g02355	-		-	cam:101504189	1182.55