LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa6g02354	ATGAAACTCGGTTGGAATTTCGACACAAACACAGAAACATACATTAATTCATGGAAGGTAACAGAACAAGACCCTTCCAATGGAGACATATCTTTCAAGATGGATTATCAAGGTATCCCAGAGATTTTCCTATGGAACAAAAACAAAAGAATTTACAGAAGTGGACCATGGAATGGTAAAAGATTCAGTGGTGTACCAGAGATGCAACCGGTTACCGATTCGATTCAATTCAGTTTCGTCGAGAACGAACACGAGGTTTACTACACATTCACAATTGGGAAACAGTCCTTATTTTCAAGACTCAGTGTGACTCCATTAGGTGAACTTCAAAGACTGACATTTATAAATAGCAGAAGCTTTTGGAGTAAATTCTGGTATGCACCAAAAGACCAATGTGACCATTACAAAGAGTGTGGCCCGTTTGGTGTATGTGACACAAACGGTTCACCTGTTTGCAGTTGTATAAAAGGGTTTAGACCCAAGAATCATCAAGCATGGAATTTGAGAGATGGATCTGATGGGTGTTTGAGGAACAATGAGCTGGATTGTGAGAGTGACAGGTTTTTGCGTATGGTGAATGTGAAGTTACCTGAGACGAGTAGGGTTTTTGTGAATAGGAGTATGGGGATTTTGGAGTGTGGTGAGATGTGTAAGAGGAATTGTTCTTGTAGTGGTTATGGGAATGTTGAGGTTGTGAATGGTGGAAGTGGTTGTGTTATGTGGGTTGATGAATTGGTTGATATTAGAGTTTATCCTGCTGGGGGTCAAGAGCTTTTTGTCAGATTAGCAGCTTCTGATGTAGATGATGATGTGCTAAGAGAAAGTTCTGACCACAAGACAGCTAAGGCTATAGGCATTGTGGTTGGGGGTGCAGCCATTATATTTCTGGTGTTAGGAATATGTTTCTTGTGGAGGAAGAAAAAGTTACGATGTCTATTGAATTTGAAAGAGAAGAGAGAAAGAAGAGGTTCATTGGAAAGAAGTCAAGATTTGCTTATGACCGACGGAGTCTTTACAAGTAATAGAGAACAAACAAATGAAAATAACATGGATGAACTAGAATTGCCATTCTTTGATTTTAATACCATAACAATAGCTACAAATAATTTTTCTCATGAGAATAAACTTGGACAAGGAGGCTTTGGTATTGTTTACAAAGGTAGGTTGACGGAAGGTCAGGAAATTGCTGTGAAGAGATTATCGAAAAATTCGGGCCAAGGTGTTGAAGAGTTTAAGAATGAGGTCAAGTTGATTGTCAAGCTTCAACATCGAAATCTTGTTCGGCTACTTGGTTGCAGCTTTCAGATGGATGAGAAGATGTTAGTGTATGAGTACATGGAAAATAGAAGCCTTGATGCCATTTTATTTGACAAGACTAAAAAATCCTCACTCGATTGGAAAACGCGCTTCAATATTATATGCGGAATAGCTAGAGGACTTCTTTATCTTCATCAAGATTCAAGGTTTAGGATTATCCATAGAGATCTTAAGGCAAGCAACATTCTACTTGATCGAGAAATGAACCCTAAGATATCCGACTTCGGGATGGCTAGAATTTTTGGCACGGATCAGACAGAGGCGAATACAGTTAGAGTTGTTGGAACATATGGTTATATGTCTCCTGAATATGCTATGGACGGAATCTTCTCGGTGAAATCAGATGTTTTCAGTTTTGGCGTACTTGCGATGGAAATCATAAGTGGAAAAAAGAACCGAGGTTTCTATTCCGCAAGTAAAGAATTGAATCTTCTTGGTCATAGTTGGAAGCTGTGGAAAGAAGGAAATTCTTTGGAGCTAATAGATTCGTCCATAATTGATAATTCATATTTACCATCTGAGGTTCTTAGATGCATACAAGTTGGATTATTATGTGTACAAGAGAGAGCAGAAGATAGACCAACAATGTCTTCAGTGGTTTTGATGTTGAGTAGTGAAACAGCAACAATAGCACAGCCCAAAAACCCTGGATTTTGCCTAGGAAGCATTCCTATTGAAACCGATTCTTCATCAAGTAAACAAGACGAATCTTGCAGCGTGAACCATGTTACTGTCACAATGGTAGATGGCAGATAG	2073	0.3893	MKLGWNFDTNTETYINSWKVTEQDPSNGDISFKMDYQGIPEIFLWNKNKRIYRSGPWNGKRFSGVPEMQPVTDSIQFSFVENEHEVYYTFTIGKQSLFSRLSVTPLGELQRLTFINSRSFWSKFWYAPKDQCDHYKECGPFGVCDTNGSPVCSCIKGFRPKNHQAWNLRDGSDGCLRNNELDCESDRFLRMVNVKLPETSRVFVNRSMGILECGEMCKRNCSCSGYGNVEVVNGGSGCVMWVDELVDIRVYPAGGQELFVRLAASDVDDDVLRESSDHKTAKAIGIVVGGAAIIFLVLGICFLWRKKKLRCLLNLKEKRERRGSLERSQDLLMTDGVFTSNREQTNENNMDELELPFFDFNTITIATNNFSHENKLGQGGFGIVYKGRLTEGQEIAVKRLSKNSGQGVEEFKNEVKLIVKLQHRNLVRLLGCSFQMDEKMLVYEYMENRSLDAILFDKTKKSSLDWKTRFNIICGIARGLLYLHQDSRFRIIHRDLKASNILLDREMNPKISDFGMARIFGTDQTEANTVRVVGTYGYMSPEYAMDGIFSVKSDVFSFGVLAMEIISGKKNRGFYSASKELNLLGHSWKLWKEGNSLELIDSSIIDNSYLPSEVLRCIQVGLLCVQERAEDRPTMSSVVLMLSSETATIAQPKNPGFCLGSIPIETDSSSSKQDESCSVNHVTVTMVDGR	690

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa6g02354	690	Pfam	PAN-like domain	183	248	IPR003609	-
	Vifa6g02354	690	Pfam	Domain of unknown function (DUF3403)	644	690	IPR021820	GO:0004674
	Vifa6g02354	690	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230	336	445	-	-
	Vifa6g02354	690	SUPERFAMILY	Protein kinase-like (PK-like)	348	642	IPR011009	-
	Vifa6g02354	690	CDD	PAN_AP_plant	181	263	-	-
	Vifa6g02354	690	SMART	serkin_6	370	640	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa6g02354	690	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	491	503	IPR008271	GO:0004672\|GO:0006468
	Vifa6g02354	690	Pfam	S-locus glycoprotein domain	52	162	IPR000858	GO:0048544
	Vifa6g02354	690	ProSiteProfiles	PAN/Apple domain profile.	183	263	IPR003609	-
	Vifa6g02354	690	Pfam	Protein tyrosine and serine/threonine kinase	372	640	IPR001245	GO:0004672\|GO:0006468
	Vifa6g02354	690	CDD	STKc_IRAK	376	642	-	-
	Vifa6g02354	690	ProSiteProfiles	Protein kinase domain profile.	370	657	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa6g02354	690	Pfam	Receptor serine/threonine kinase	326	360	IPR022126	GO:0004674
	Vifa6g02354	690	Gene3D	Transferase(Phosphotransferase) domain 1	446	654	-	-
	Vifa6g02354	690	ProSitePatterns	Protein kinases ATP-binding region signature.	376	398	IPR017441	GO:0005524
	Vifa6g02354	690	Gene3D	Phosphorylase Kinase; domain 1	343	445	-	-
	Vifa6g02354	690	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	446	650	-	-
	Vifa6g02354	690	SMART	ntp_6	183	262	IPR003609	-
	Vifa6g02354	690	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	6	669	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa6g02354	Vifa-Chr6	816190842	816195826	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa6g02354	321	685	Receptor kinase-like Gene Family	AT4G11530	54.324	9.58e-133	405

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vifa6g02354		PK_Tyr_Ser-Thr	4.9e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa6g02354	-		-	cam:101504189	1179.47