Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02353 ATGAAAGAGGAGTACGTAAAAGGAACTCAATGGACTGCTAAATATCTTCTCTACCTTTTTAATCCCCAAAACCATAAACTCAAGGGACTGCTGCTTAACTATTTGATTCTGCTCCTTTTAACATTCTCTTTTTGCTCTTGTTCTACTGATACCATATCTATTCACAAACCTATAACAGATGGGGAGCTTCTCATTTCTAAATCTAAAACGTTTGCACTTGGATTCTTCACTCCTGGAAACTCCACGTCTCGCTATGTTGGAATTTGGTACTACAATTTGCCAATCCAAACTGTTGTTTGGGTTGCAAACAGAGATACTCCAATCAATGATACTTCTGGAATCCTATCAATTGACCCGAGTGGAAATCTAGTACTCCACCGCATCCTTAGCACCATTCCTATTTGGTCTACCAATGTTTCGTTACCACAATCACTAACAAATAACAACACTGTTGTTATAGCTCAACTATCGGATATAGCAAACTTTGTTCTCATGCTAAACAACACCAAAGCTGTCATCTGGGAAAGCTTTAGTTATCCCACAGACACCATGCTTCCATATCTAAAGGTTGGTTTTGATAGAAAAGCTAATCAAAGCTGGTTCCTTCAATCATGGAAGACAGATGAGGACCCTGGAAAAGGTGCATTCACGGTGAAATTCAGCACCATTGGTAAGCCTCAGTTTTTTATGTACAACCATGATCTTCCTTGGTGGCGTGGTGGGCCCTGGAATGGAGCACTATTAGCAGGTATACCTAATGCAAAACGAGCTAGGACCATTTATAATGTTTCTTTTGTTGGAGATGACAACTCTGTAGCAATTTCATTTAACATGATAGATAAGTCTGCCCTTACTAGAACAGTCGTTCAACCGTCTGGTTTCATTCAAACACTCACATGGGACAATCAAAAGAGTCAATGGAACCAGTTCTTTACAGAACCAACAAACCAATGTGATAACTATGGAACATGTGGATCAAACAGTAATTGTGACCCTTTGAACTTTGAAGATTTTAAGTGTTCTTGTTTACCTGGTTTTGAACCCAAATTTCCACATGATTGGTATCAGAATGGAGATGGGTCAGCAGGGTGTGTAAGGAAGAAAGGTGCATCTGTTTGTGGGAATGGAGAAGGGTTTGTCAAAGTTGTAAGCTTGAAAGTTCCTGATACATCTGTGACATTTGACAAAGGTGGTTTGAATTTGGAAGAATGTGAGAAAGAATGCTTGAGAAACTGCTCTTGTACTGCCTATGCAACTGCTAATGTGAGGAATGGTGGAAGTGGATGTTTGGCATGGCATGGGGATTTAATGGACATTCAAAAACTAAGTGATCAAGGCCAAGATTTATTTTTACGCGTCGATAAAGTTGAACTAGCAAATTACCACAAAAGCGAGAAAGGACGCCTTGATAAAAAGAGATTGTTGGCTGCAATTCTGATAGCTTCTATTGTTGCAATTGTCCTCCTCCTCTCCTGTGTGTATTTCATGAGAAAGAAAAAAAGAAATGAAAAAGTGATGCAGCAATTAAACCAAGATTCCTCTGGAGAAGAGAACGGTCCTCAAAGCAACACACGTCCAAATCTACCCTTTTTCAGCTTCAGAATGATAACAGCGGCTACAAGCAATTTTAGTAATGAGAATAAGCTAGGACAAGGTGGATTTGGTTCTGTCTATAAGGGTTGCTTAGTTAATGGACAAGAGATAGCAGTGAAAAGATTGTCAAAAGATTCAGGTCAAGGCAAAAAAGAGTTTAAAAATGAAGTTACACTTTTAGTAAAACTTCAACACAGGAATCTAGTGAGGTTGCTTGGTTGTTGCTTTGAGAAACAAGAAAGAATGCTGGTTTATGAATACCTACCAAACAAAAGCCTAGACTTCTTTATATTTGATCAAACCCAAAGGTCATCATTGGATTGGGATTTTGGTATGGCTAGAATATTTGAAGAAGATGAAATTCAAGCAAGGACAAAAAGAGTGGTCGGAACATATGGATATATGGCCCCAGAATATGCAATGGAAGGACTATATTCAACAAAATCTGATGTCTTCAGTTATGGGATCTTACTATTAGAAATTATTGCTGGACAAAGAAACTCACATCGTGAAAAAGAAAGATCCTCCCCAAATTTAATTGGACATGTATGGACACTATGGACAGAGGGAAGTGCCTTGGATATAGTTGATCCAGCACTAAACCAGTTTTATCCTTCTGATATAGTTCTGAAATGCATTAAAATTGGACTCTTGTGTGCGCAAGAAAATGCCATGAATAGACCATCAATGTTGGAAGTTGTTTTCATGCTATCCAATGAAACTCCTCTTTCCCCACCTCAAAAACCAGCTTTTTTATTCAACGGAAACCAAGATTTTCAAGAATCCTCAACATCAGGAGGAGGTTCTTCAATAAATGGATTAACAGAAACTACCATCAGCGCTCGTTAA 2442 0.3857 MKEEYVKGTQWTAKYLLYLFNPQNHKLKGLLLNYLILLLLTFSFCSCSTDTISIHKPITDGELLISKSKTFALGFFTPGNSTSRYVGIWYYNLPIQTVVWVANRDTPINDTSGILSIDPSGNLVLHRILSTIPIWSTNVSLPQSLTNNNTVVIAQLSDIANFVLMLNNTKAVIWESFSYPTDTMLPYLKVGFDRKANQSWFLQSWKTDEDPGKGAFTVKFSTIGKPQFFMYNHDLPWWRGGPWNGALLAGIPNAKRARTIYNVSFVGDDNSVAISFNMIDKSALTRTVVQPSGFIQTLTWDNQKSQWNQFFTEPTNQCDNYGTCGSNSNCDPLNFEDFKCSCLPGFEPKFPHDWYQNGDGSAGCVRKKGASVCGNGEGFVKVVSLKVPDTSVTFDKGGLNLEECEKECLRNCSCTAYATANVRNGGSGCLAWHGDLMDIQKLSDQGQDLFLRVDKVELANYHKSEKGRLDKKRLLAAILIASIVAIVLLLSCVYFMRKKKRNEKVMQQLNQDSSGEENGPQSNTRPNLPFFSFRMITAATSNFSNENKLGQGGFGSVYKGCLVNGQEIAVKRLSKDSGQGKKEFKNEVTLLVKLQHRNLVRLLGCCFEKQERMLVYEYLPNKSLDFFIFDQTQRSSLDWDFGMARIFEEDEIQARTKRVVGTYGYMAPEYAMEGLYSTKSDVFSYGILLLEIIAGQRNSHREKERSSPNLIGHVWTLWTEGSALDIVDPALNQFYPSDIVLKCIKIGLLCAQENAMNRPSMLEVVFMLSNETPLSPPQKPAFLFNGNQDFQESSTSGGGSSINGLTETTISAR 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02353 813 PIRSF SRK 23 639 IPR024171 GO:0004674
Vifa6g02353 813 PIRSF SRK 640 813 IPR024171 GO:0004674
Vifa6g02353 813 ProSiteProfiles Bulb-type lectin domain profile. 49 177 IPR001480 -
Vifa6g02353 813 SMART ntp_6 374 453 IPR003609 -
Vifa6g02353 813 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 36 760 - -
Vifa6g02353 813 Pfam D-mannose binding lectin 97 206 IPR001480 -
Vifa6g02353 813 CDD PAN_AP_plant 374 453 - -
Vifa6g02353 813 Pfam Protein tyrosine and serine/threonine kinase 640 764 IPR001245 GO:0004672|GO:0006468
Vifa6g02353 813 Pfam Protein tyrosine and serine/threonine kinase 545 631 IPR001245 GO:0004672|GO:0006468
Vifa6g02353 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 44 177 - -
Vifa6g02353 813 Pfam S-locus glycoprotein domain 238 350 IPR000858 GO:0048544
Vifa6g02353 813 MobiDBLite consensus disorder prediction 791 813 - -
Vifa6g02353 813 ProSiteProfiles EGF-like domain profile. 314 352 IPR000742 -
Vifa6g02353 813 SMART blect_4 55 180 IPR001480 -
Vifa6g02353 813 Gene3D - 42 178 IPR036426 -
Vifa6g02353 813 Gene3D Phosphorylase Kinase; domain 1 502 618 - -
Vifa6g02353 813 SUPERFAMILY alpha-D-mannose-specific plant lectins 98 211 IPR036426 -
Vifa6g02353 813 Gene3D Hepatocyte Growth Factor 371 451 - -
Vifa6g02353 813 CDD B_lectin 57 180 IPR001480 -
Vifa6g02353 813 ProSitePatterns Protein kinases ATP-binding region signature. 549 571 IPR017441 GO:0005524
Vifa6g02353 813 Gene3D Transferase(Phosphotransferase) domain 1 637 775 - -
Vifa6g02353 813 Pfam PAN-like domain 373 439 IPR003609 -
Vifa6g02353 813 ProSiteProfiles Protein kinase domain profile. 543 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02353 813 CDD EGF_CA 316 349 - -
Vifa6g02353 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 506 618 - -
Vifa6g02353 813 SUPERFAMILY Protein kinase-like (PK-like) 524 783 IPR011009 -
Vifa6g02353 813 ProSiteProfiles PAN/Apple domain profile. 373 454 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02353 Vifa-Chr6 816174817 816178714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02353 485 791 Receptor kinase-like Gene Family AT3G45860 43.978 1.86e-88 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa6g02353 PK_Tyr_Ser-Thr 1.8e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02353 - - tpra:123918163 1228.39