Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02352 ATGAATCCCAAAATCTCAGATTTTGGTATGGCTAGAATATTTGGAGAAGATGAAATCCAAGCAAGAACTAAAAGAGTGGTCGGAACATATGGATATATGGCCCCAGAATATGCAATGGAAGGACGATATTCAACAAAATCTGGTGTCTTCAGTTACGGGGTGTGGATACTATGCACAGAAGAAAAGGCCTTGGATATAGTTGATCTAGCACTAAACCAGTCTTATCCTTCTGATATAGTTCTGAAATGCATTCAAATTGGACTCTTGTGTGTGCAAGAAAATGCCATGAATAGACCATCAATGCTAGAAGTTGTTTTCATGCTAGCCAATGAAACACCTCTCTTCCCACCTCAAAAACCTGCAACTACCATCATTGGTCGCTAA 384 0.3958 MNPKISDFGMARIFGEDEIQARTKRVVGTYGYMAPEYAMEGRYSTKSGVFSYGVWILCTEEKALDIVDLALNQSYPSDIVLKCIQIGLLCVQENAMNRPSMLEVVFMLANETPLFPPQKPATTIIGR 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02352 127 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 121 - -
Vifa6g02352 127 SUPERFAMILY Protein kinase-like (PK-like) 1 118 IPR011009 -
Vifa6g02352 127 Gene3D Transferase(Phosphotransferase) domain 1 1 114 - -
Vifa6g02352 127 Pfam Protein kinase domain 3 59 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02352 127 ProSiteProfiles Protein kinase domain profile. 1 115 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02352 Vifa-Chr6 816167686 816168308 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02352 1 116 Receptor kinase-like Gene Family AT4G05200 44.755 1.81e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa6g02352 Pkinase 3.9e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02352 - - mtr:11411809 209.149