Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02351 ATGACTCCAAATTTCATATTCAACGTTAGCTACACCAACAACGAAGATGAAGTTTCCATACTATACGGTGTGAAGGATCCAAGGGTGTTAACGAGAATGGTTTTGGAAGAAGCGGGTCACGTGAGGAGGCTGACGTGGCAACCTAGCGAACGTAGATGGTTTCAGATTTGGTACGGTCCGAAAGAGGAATGTGATGATTTCAAACAGTGCGGGTCGAACTCGAACTGTGACCCGTATAATGCGGACAAATTTGAGTGTGAGTGTTTACCCGGGTTTGAACCGAAGTTTGCAAGGGAATGGTATTTGAGAGACGGGTCGGGTGGGTGTGTGAGGAAGAGGAATGTTTCCACGTGTGGAAGTGGGGAAGGGTTTGTGAAAGTAGCACGTGTGAAAGTGCCTGATACTTCAAAGGCACATGTGAATGAGAGTTTGGGTTTGAAAGAGTGTAGAGAGAAGTGTTTGGAAGATTGTTCTTGTGTTGCGTATACAAGTGAAAATGAGGTAACTGAGAGTGGGTGTGTTACTTGGCACGGTGACATGGAAGATACAAGAACTTATACACAAGTTGGACAAGATTTGTATACACGTGTGGATGCACATGAGTTGGCTATGTATGCAAAACATCCATATGGTTCTCTTGGAAAAAAGGGGATGGTGGCAGTATTAGTTATTTCTTCTTGCTTGGTATTGTTTATGGGGATCGTTTTCGTGTATTGGTTTGTGAAATCCAGGAAACAATGGTCGAAAAGGGATCCCAAGTATTCGTTTCGTCTTAGCTTTGGCGACTCTTCTAATCAGCAAGAGTTTGATAGTACAAACAATTCAAATTTACCATTCTTTGATCTTAGCTCCATAGCTGCTGCAACAGACAGTTTTTCACTTGCTAACAAGCTTGGTGAAGGTGGTTTTGGTTCTGTTTATAAGGGTATATTGAGCAATGGAATGGCAATTGCAGTGAAGAGACTGTCAAAGTATTCTGGACAAGGCATACAAGAGTTTAAAAATGAGGTTGTTTTGATTTCAAAGCTGCAACACAGAAATCTTGTGAGGATCTTAGGTTGCTGCATTCAAGGAGAAGAAAAGATGTTAATCTATGAGTATTTGCCTAACAAAAGCTTAGACTTTTTCATTTTTGATAAATCTAAAAGCTCAGAGCTAGACTGGAGAAAACGAATGTTTGGTGGAGATCAAATTGAAGCAATCACAAATCGTGTCGTTGGAACCTATGGTTATATGTCTCCAGAATATGCCATGGAAGGACAATTTTCAGTGAAGTCCGATGTATATAGCTTTGGAGTTTTACTGCTTGAGATTATTACAGGAAAGAAGAACAGTGGTCAATATGAAGACAATGCATCCACAAATTTAGTTGGGCATATATGGGATCTATGGAGAGAAGACAAAGCCATGGAGATTGTTGATCGATCATTAGGAGAGTCATTCTCCGAGTTTGAAGTCCAAAGATGCATCCAAATTGGGCTTTTATGTGTACAAGATTATGCTGTTGACCGACCATCTATGTCAGCTGTTGTATCTATGTTGGGAAATGACTCAACTCTTCCTACTCCAAAACAACCAGCATTTATTTTCAAGAAAAGTAACTATGAGAGTTCAAATCCATCAACCAGTGAAGGAATTTACTCTGTGAATGATGTAAGTATGACTATGATTGAAGCTCGCTAA 1683 0.4034 MTPNFIFNVSYTNNEDEVSILYGVKDPRVLTRMVLEEAGHVRRLTWQPSERRWFQIWYGPKEECDDFKQCGSNSNCDPYNADKFECECLPGFEPKFAREWYLRDGSGGCVRKRNVSTCGSGEGFVKVARVKVPDTSKAHVNESLGLKECREKCLEDCSCVAYTSENEVTESGCVTWHGDMEDTRTYTQVGQDLYTRVDAHELAMYAKHPYGSLGKKGMVAVLVISSCLVLFMGIVFVYWFVKSRKQWSKRDPKYSFRLSFGDSSNQQEFDSTNNSNLPFFDLSSIAAATDSFSLANKLGEGGFGSVYKGILSNGMAIAVKRLSKYSGQGIQEFKNEVVLISKLQHRNLVRILGCCIQGEEKMLIYEYLPNKSLDFFIFDKSKSSELDWRKRMFGGDQIEAITNRVVGTYGYMSPEYAMEGQFSVKSDVYSFGVLLLEIITGKKNSGQYEDNASTNLVGHIWDLWREDKAMEIVDRSLGESFSEFEVQRCIQIGLLCVQDYAVDRPSMSAVVSMLGNDSTLPTPKQPAFIFKKSNYESSNPSTSEGIYSVNDVSMTMIEAR 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02351 560 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 393 519 - -
Vifa6g02351 560 CDD PAN_AP_plant 116 197 - -
Vifa6g02351 560 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524
Vifa6g02351 560 SUPERFAMILY Protein kinase-like (PK-like) 276 533 IPR011009 -
Vifa6g02351 560 Gene3D Transferase(Phosphotransferase) domain 1 369 524 - -
Vifa6g02351 560 ProSiteProfiles EGF-like domain profile. 60 98 IPR000742 -
Vifa6g02351 560 ProSiteProfiles PAN/Apple domain profile. 118 198 IPR003609 -
Vifa6g02351 560 ProSiteProfiles Protein kinase domain profile. 292 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02351 560 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 7 506 - -
Vifa6g02351 560 SMART ntp_6 119 197 IPR003609 -
Vifa6g02351 560 Pfam PAN-like domain 118 182 IPR003609 -
Vifa6g02351 560 Pfam Protein tyrosine and serine/threonine kinase 294 384 IPR001245 GO:0004672|GO:0006468
Vifa6g02351 560 Pfam Protein tyrosine and serine/threonine kinase 409 513 IPR001245 GO:0004672|GO:0006468
Vifa6g02351 560 Gene3D Phosphorylase Kinase; domain 1 257 367 - -
Vifa6g02351 560 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 258 367 - -
Vifa6g02351 560 Pfam S-locus glycoprotein domain 4 96 IPR000858 GO:0048544
Vifa6g02351 560 Pfam Domain of unknown function (DUF3403) 516 560 IPR021820 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02351 Vifa-Chr6 816164096 816166831 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02351 267 560 Receptor kinase-like Gene Family AT4G11530 46.286 3.04e-94 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa6g02351 PK_Tyr_Ser-Thr 4.1e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02351 - - gmx:100812814 916.376