Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02350 ATGGCGACTCATCTCCCCGAACACTTCAAATGTCCGATTTCCCTCGAAATAATGTCTGACCCAGTCATCTTATCTTCCGGCCACACATTCGATCGTCCTTCAATCCAACGATGGCTAGACGATGGTCACAGAACTTGTCCAATTACGAAACTACCCCTCCCTGATAATCCTTCCCTTATTCCCAATCACGCTCTTCGAAGCTTAATCTCTACCTACACACTCTTACCACCGCTGCACCAGATCATGTCCCAGCCGGAAACCCTAATTTCGTCTTTAACCGCTTCTTCGTCTTCCTCCGATTTCAAAATCGACTCGCTCCGGCAACTCGGTCGACTCTCCAAGCGTGACGCTAACTTCCGCCGCCGTCTTGTTGATTCCGGTGCTGTCTTCGCCGTCCTTTTCTGCATCGACTCCTCCTCCGGTGACTCTAAGCTTCAGGAGAAGGCTCTATCTCTTCTTCTCAACCTTAGCCTCGACGACGACACTAAGATTGGACTTGTCGCCGAGGGAGCAATCTCCCGCGTCGTCGCTTTTCTCCTCCGTGCAGCCTCGTCCGACTGCCGTGCTTTGGCTGCAACTATAATCACGAGCCTTGCTGTCGTTGAGGTGAATAAAGCGACTATCGGGGCTTTTCCGGGAGCAATCGGAGCTTTGGTGGCGATTCTTCGGGATGGGAAGGGGAGAGAGAGGAAAGAAGCGGCTACTGCACTTTACGCGCTTTGCTGTTTTCGGGATAATCGGAAAAGGGCGGTGGATTGTGGCGCGGTGCCGATTTTAATGAGATGTGTTGAATGTGGACTTGAAAGAGGTGTTGAGGTTATTGGTGTTTTGGCTAAGTGTAAGGAAGGGAGGGAACAATTGGAGAGTTACAGTGGTTGTGTGCAGATTCTGGTTCGTGTGTTGAGGATTGGAAGCTCAAGAGGGATTCAGTATGCAGTGTTGGCACTTACTTTACTGTGTTTTCATAGCAAGGAAATGCTTTTGGTGACCCTGCAAGAAGGAGTTTTGGAAATCTGTCATGGGTTGTTAGAGGATGATAATGAGAAAGTTAGGAGAAATTCCTCCAATTTGATTCGGGTTCTTCGCTGA 1089 0.4949 MATHLPEHFKCPISLEIMSDPVILSSGHTFDRPSIQRWLDDGHRTCPITKLPLPDNPSLIPNHALRSLISTYTLLPPLHQIMSQPETLISSLTASSSSSDFKIDSLRQLGRLSKRDANFRRRLVDSGAVFAVLFCIDSSSGDSKLQEKALSLLLNLSLDDDTKIGLVAEGAISRVVAFLLRAASSDCRALAATIITSLAVVEVNKATIGAFPGAIGALVAILRDGKGRERKEAATALYALCCFRDNRKRAVDCGAVPILMRCVECGLERGVEVIGVLAKCKEGREQLESYSGCVQILVRVLRIGSSRGIQYAVLALTLLCFHSKEMLLVTLQEGVLEICHGLLEDDNEKVRRNSSNLIRVLR 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02350 362 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Vifa6g02350 362 SUPERFAMILY RING/U-box 4 73 - -
Vifa6g02350 362 CDD RING-Ubox_PUB 6 55 IPR045210 -
Vifa6g02350 362 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Vifa6g02350 362 Gene3D - 269 362 IPR011989 -
Vifa6g02350 362 Gene3D - 82 268 IPR011989 -
Vifa6g02350 362 FunFam RING-type E3 ubiquitin transferase 4 75 - -
Vifa6g02350 362 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Vifa6g02350 362 PANTHER U BOX DOMAIN-CONTAINING 6 353 - -
Vifa6g02350 362 SUPERFAMILY ARM repeat 67 361 IPR016024 -
Vifa6g02350 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 74 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02350 Vifa-Chr6 815917288 815918376 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02350 1 361 U-box Gene Family AT4G21350 57.838 4.18e-137 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02350 - - gmx:100785141 508.449