Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02347 ATGGAACCAGGAAATGACCATAGACTATATGTGTCTATAGAGGATTTAGGTTTCAATGGTGAAAATTGCAACCATAGGGGAAAATTGAGAAAGATTAACCACTATGATGATGATGATACACATGTGTACACATCAAAGAACCTTGAAACAGAAAGAAAAAGGAGGGAGAAGCTCAGTAGCAGACTCTTGATGCTTCGCTCTTTAGTACCAAACATCACAAATATGAACAAAGCAAGCATTATTGAAGATGCTATCACTTACATGCAAAAATTGCAAAATGAAGTTAAGAGTCTCACGGATGAGCTTCATGATATGGGAGGAACAAAAGAGAAAAAAGATGAGACAAAAATAAGTGATTCTTCTGCTGCCGCTGCTGAAGAAGAGATGAAAAATTGGGGCATACAGGAAGAGATTGGGGTGGCAAAGGTTGATAAGAATAAGATATGGGTTAAGATGATACTTGTGAACAAGAGAGGAAGGATTATGAAATTAATTGAAGATTTGAATGATTCACGCATTGAAATAATTGACGTTAGTGTTACAACTATAGAACAGGCATATCTTATTACAGCAACATTACAGGGCTTAGATGGTGAACCACTTGAAGAATATCACATTCCAACTCTTATCAAGTTAGATTAG 642 0.3614 MEPGNDHRLYVSIEDLGFNGENCNHRGKLRKINHYDDDDTHVYTSKNLETERKRREKLSSRLLMLRSLVPNITNMNKASIIEDAITYMQKLQNEVKSLTDELHDMGGTKEKKDETKISDSSAAAAEEEMKNWGIQEEIGVAKVDKNKIWVKMILVNKRGRIMKLIEDLNDSRIEIIDVSVTTIEQAYLITATLQGLDGEPLEEYHIPTLIKLD 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02347 213 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 42 91 IPR011598 GO:0046983
Vifa6g02347 213 SMART finulus 48 97 IPR011598 GO:0046983
Vifa6g02347 213 Pfam Helix-loop-helix DNA-binding domain 48 92 IPR011598 GO:0046983
Vifa6g02347 213 Gene3D - 38 106 IPR036638 GO:0046983
Vifa6g02347 213 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 104 IPR036638 GO:0046983
Vifa6g02347 213 Coils Coil 81 108 - -
Vifa6g02347 213 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 41 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02347 Vifa-Chr6 815256884 815257887 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02347 43 194 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 43.949 8.40e-36 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa6g02347 HLH 4.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02347 - - mtr:25493240 213.001