Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02345 ATGGAACAAGTTAATGACAGTAGTAGATTTTCTGTGTCTCAAGATGAGTTGTTTCACAATGCTGAAGAGGACATCAATAAGGGAAAACCTAGGATGAAATACTATAATGAAGATGGCACAAGAATGTTTGTATCAAAGAATCTTGAGATTGAAAGGAGGAGGAGAGATAAACTTCATTCAAGGCTTTGCACACTTCGGTCTATAATGCTGAAAGAAAGCATTATTGAAGATGCTATTACTTATGTCAAGAAGCTTCAAGATGAAGTTAATAGTCTCACACAAGAGCTTCAAGCATTGGAAGCAAAAGAAAACTTGGAGCGGAAAATCGATGAAGTTTCTGGTGCAGAAGAGATGAAGAAATGGGGGATACAGGAAGAGATTCGTGTGGAAAAAACTGATGGGACTAAGCTGTGGATTAAGATGATCATTGAGAAAAAGAGAGGGAGGTTCAACAAATTAATGGAGATTATGAATGATTTGTGCATTGAAATGACAGACATTAGTGTTACAACTATAAAAGGAGCTTACATGATCACAACTTGCTTAAAGAACATGGGTGGTGAACCATTTGATGTTGATCAAGCAAAATATTGGTTGCAAGATATAATCAAGATGATTTAG 621 0.3607 MEQVNDSSRFSVSQDELFHNAEEDINKGKPRMKYYNEDGTRMFVSKNLEIERRRRDKLHSRLCTLRSIMLKESIIEDAITYVKKLQDEVNSLTQELQALEAKENLERKIDEVSGAEEMKKWGIQEEIRVEKTDGTKLWIKMIIEKKRGRFNKLMEIMNDLCIEMTDISVTTIKGAYMITTCLKNMGGEPFDVDQAKYWLQDIIKMI 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02345 206 SMART finulus 48 91 IPR011598 GO:0046983
Vifa6g02345 206 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 41 100 IPR036638 GO:0046983
Vifa6g02345 206 Coils Coil 75 118 - -
Vifa6g02345 206 Gene3D - 44 112 IPR036638 GO:0046983
Vifa6g02345 206 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 22 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02345 Vifa-Chr6 814553463 814554397 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02345 43 204 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 42.135 7.22e-32 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02345 - - gmx:100793107 197.593