Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02344 ATGGAACAAGTTAATGACAGTAGTAGATTTTCTGTGTCTCAAGATGAGTTGTTTCACAATGCTGAAGAGGACATCAATAAGGGAAAACCTAGGATGAAATACTATAATGAAGATGGCACAAGAATGTTTGTATCAAAGAATCTTGAGATTGAAAGGAGGAGGAGAGATAAACTTCATTCAAGGCTTTGCACACTTCGGTCTATAGTACCAAATATCACAAATATGCTGAAAGAAAGCATTATTGAAGATGCTATTACTTATGTCAAGAAGCTTCAAGATGAAGTTAATAGTCTCACACAAGAGCTTCAAGCATTGGAAGCAAAAGAAAACTTGGAGCGGAAAATCGATGAAGTTTCTGGTGCAGAAGAGATGAAGAAATGGGGGATACAGGAAGAGATTCGTGTGGAAAAAACTGATGGGACTAAGCTGTGGATTAAGATGATCATTGAGAAAAAGAGAGGGAGGTTCAACAAATTAATGGAGATTATGAATGATTTGTGCATTGAAATGACAGACATTAGTGTTACAACTATAAAAGGAGCTTACATGATCACAACTTGCTTAAAGAACATGGGTGGTGAACCATTTGATGTTGATCAAGCAAAATATTGGTTGCAAGATATAATCAAGATGATTTAG 639 0.3584 MEQVNDSSRFSVSQDELFHNAEEDINKGKPRMKYYNEDGTRMFVSKNLEIERRRRDKLHSRLCTLRSIVPNITNMLKESIIEDAITYVKKLQDEVNSLTQELQALEAKENLERKIDEVSGAEEMKKWGIQEEIRVEKTDGTKLWIKMIIEKKRGRFNKLMEIMNDLCIEMTDISVTTIKGAYMITTCLKNMGGEPFDVDQAKYWLQDIIKMI 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02344 212 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 42 91 IPR011598 GO:0046983
Vifa6g02344 212 SMART finulus 48 97 IPR011598 GO:0046983
Vifa6g02344 212 Gene3D - 43 120 IPR036638 GO:0046983
Vifa6g02344 212 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 107 IPR036638 GO:0046983
Vifa6g02344 212 Pfam Helix-loop-helix DNA-binding domain 48 92 IPR011598 GO:0046983
Vifa6g02344 212 Coils Coil 81 124 - -
Vifa6g02344 212 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 22 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02344 Vifa-Chr6 814553463 814554397 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02344 43 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 44.382 9.66e-38 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa6g02344 HLH 1.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02344 - - mtr:25493240 209.149