Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02336 ATGGAGGAAGCTATGCTTTGCGACGAATTACCAAAATTCAGTGATATTAGACGCTATTTCTGCCCATACTGCGCTATCTCTAGGTCCAAAAAAACCCTAATCACCTCCCACATCAATTCCCAACACAAGGAAGAGTTGGAGAAAGCTAAAGTTGAATCTCAACATGAAGCAGAGGTTGATGTGAAAGATAATACATGTGAGGAGTGTGGTGCTAATTTCAAAAAACATGCTTATTTGTTGCAGCATATGCAAAGCCATTCTCTTGAGGAAAGTAATGTTTTAGACACTAAAATGATCTATATAATTATGGACATTATAGTGTTGGGAGACCTCCTGAGAAGCTTCATCAAGGATATGCCTCGGTCACGCTCAATTCAAAACAAGAGGCCATATGCATGTACCCTTGAGGATTGTAATGCAAGTTATAGAAGAAAGGACCATTTGAATCGTCACCTTCTACAGCATCAAGGGAAAAATTTCAAATGTCCCGTTGAGAATTGCAAAAGTGATTTCTCTTTGCAAAGCAATTTGAAAAGACATCTTGGCGAGATGCATGATGAAAATTCTACACCTGCTAGGAATGGTGAAAACCAGAAGCGGTTTGTATGTCCTGAAACTGGTTGCGGAAAGGTTTTTCGATATGCATCACGGCTACAAAAGCATGAAGATTCTCATGTTAAGCTGGAGACAGTTGACGTGCTGTGCTTAGAGCCGGGTTGCTTGAAACATTTCACCAATTCCGAGTGCCTTAAGGCTCATGTTAAGTCCTGCCATCAATATGTAACCTGTGACACTTGTGGGACTAAGCAACTGAAGAAGAACATGAAAAGGCATCTCCGTACACACGAAACCGGCACTTCATCAGAACCCTTTAAATGTGAACACAAGGATTGTGACTGCACATTCTCAACTAAATCTAATCTTCAAAAGCATGAGAAGGCAGTACACTTTGAAGTAAGGTCTTTTGTGTGTGGATTTCGTAACTGTGGCATGAGATTTGCTTACAAACACGTGAAAGACAATCATGAAAAGACGGCAAAACATCTTTTTACCCTTGGTGACTTTGAAGAAGCTGATGAAGAATTCAGGTCAAGGCCAAGGGGAGGGGTGAAGAGAAAATGTCCTACAGTAGATATGTTGATTAGGAAAGGAGTTACTCCACCTGGTGAATTGGAGAACTTGTTGTTTAAGCAGGTTGTGAGTAAGATGGATCATACTCCTCTCTAG 1227 0.4075 MEEAMLCDELPKFSDIRRYFCPYCAISRSKKTLITSHINSQHKEELEKAKVESQHEAEVDVKDNTCEECGANFKKHAYLLQHMQSHSLEESNVLDTKMIYIIMDIIVLGDLLRSFIKDMPRSRSIQNKRPYACTLEDCNASYRRKDHLNRHLLQHQGKNFKCPVENCKSDFSLQSNLKRHLGEMHDENSTPARNGENQKRFVCPETGCGKVFRYASRLQKHEDSHVKLETVDVLCLEPGCLKHFTNSECLKAHVKSCHQYVTCDTCGTKQLKKNMKRHLRTHETGTSSEPFKCEHKDCDCTFSTKSNLQKHEKAVHFEVRSFVCGFRNCGMRFAYKHVKDNHEKTAKHLFTLGDFEEADEEFRSRPRGGVKRKCPTVDMLIRKGVTPPGELENLLFKQVVSKMDHTPL 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02336 408 SUPERFAMILY beta-beta-alpha zinc fingers 158 186 IPR036236 -
Vifa6g02336 408 SMART c2h2final6 322 348 IPR013087 -
Vifa6g02336 408 SMART c2h2final6 291 316 IPR013087 -
Vifa6g02336 408 SMART c2h2final6 160 185 IPR013087 -
Vifa6g02336 408 SMART c2h2final6 64 86 IPR013087 -
Vifa6g02336 408 SMART c2h2final6 131 155 IPR013087 -
Vifa6g02336 408 SMART c2h2final6 233 258 IPR013087 -
Vifa6g02336 408 SMART c2h2final6 261 282 IPR013087 -
Vifa6g02336 408 SMART c2h2final6 201 225 IPR013087 -
Vifa6g02336 408 SMART c2h2final6 19 42 IPR013087 -
Vifa6g02336 408 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 91 IPR013087 -
Vifa6g02336 408 ProSitePatterns Zinc finger C2H2 type domain signature. 162 185 IPR013087 -
Vifa6g02336 408 SUPERFAMILY beta-beta-alpha zinc fingers 197 227 IPR036236 -
Vifa6g02336 408 ProSiteProfiles Zinc finger C2H2 type domain profile. 201 230 IPR013087 -
Vifa6g02336 408 Gene3D Classic Zinc Finger 8 93 - -
Vifa6g02336 408 ProSitePatterns Zinc finger C2H2 type domain signature. 133 155 IPR013087 -
Vifa6g02336 408 SUPERFAMILY beta-beta-alpha zinc fingers 272 330 IPR036236 -
Vifa6g02336 408 ProSitePatterns Zinc finger C2H2 type domain signature. 293 316 IPR013087 -
Vifa6g02336 408 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 190 IPR013087 -
Vifa6g02336 408 SUPERFAMILY beta-beta-alpha zinc fingers 64 155 IPR036236 -
Vifa6g02336 408 ProSitePatterns Zinc finger C2H2 type domain signature. 235 258 IPR013087 -
Vifa6g02336 408 ProSitePatterns Zinc finger C2H2 type domain signature. 203 225 IPR013087 -
Vifa6g02336 408 Gene3D Classic Zinc Finger 198 225 - -
Vifa6g02336 408 ProSiteProfiles Zinc finger C2H2 type domain profile. 291 321 IPR013087 -
Vifa6g02336 408 Gene3D Classic Zinc Finger 156 197 - -
Vifa6g02336 408 Gene3D Classic Zinc Finger 264 321 - -
Vifa6g02336 408 ProSitePatterns Zinc finger C2H2 type domain signature. 324 348 IPR013087 -
Vifa6g02336 408 Pfam Zinc finger, C2H2 type 131 155 IPR013087 -
Vifa6g02336 408 Pfam Zinc finger, C2H2 type 201 225 IPR013087 -
Vifa6g02336 408 Pfam Zinc finger, C2H2 type 291 316 IPR013087 -
Vifa6g02336 408 PANTHER ZINC FINGER PROTEIN 11 393 - -
Vifa6g02336 408 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Vifa6g02336 408 Gene3D Classic Zinc Finger 121 155 - -
Vifa6g02336 408 ProSiteProfiles Zinc finger C2H2 type domain profile. 131 160 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02336 Vifa-Chr6 811807197 811809183 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02336 131 351 C2H2 Transcription Factor Family AT1G72050 44.856 9.48e-66 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa6g02336 zf-C2H2 0.0012 CL0361