Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa6g02336 | ATGGAGGAAGCTATGCTTTGCGACGAATTACCAAAATTCAGTGATATTAGACGCTATTTCTGCCCATACTGCGCTATCTCTAGGTCCAAAAAAACCCTAATCACCTCCCACATCAATTCCCAACACAAGGAAGAGTTGGAGAAAGCTAAAGTTGAATCTCAACATGAAGCAGAGGTTGATGTGAAAGATAATACATGTGAGGAGTGTGGTGCTAATTTCAAAAAACATGCTTATTTGTTGCAGCATATGCAAAGCCATTCTCTTGAGGAAAGTAATGTTTTAGACACTAAAATGATCTATATAATTATGGACATTATAGTGTTGGGAGACCTCCTGAGAAGCTTCATCAAGGATATGCCTCGGTCACGCTCAATTCAAAACAAGAGGCCATATGCATGTACCCTTGAGGATTGTAATGCAAGTTATAGAAGAAAGGACCATTTGAATCGTCACCTTCTACAGCATCAAGGGAAAAATTTCAAATGTCCCGTTGAGAATTGCAAAAGTGATTTCTCTTTGCAAAGCAATTTGAAAAGACATCTTGGCGAGATGCATGATGAAAATTCTACACCTGCTAGGAATGGTGAAAACCAGAAGCGGTTTGTATGTCCTGAAACTGGTTGCGGAAAGGTTTTTCGATATGCATCACGGCTACAAAAGCATGAAGATTCTCATGTTAAGCTGGAGACAGTTGACGTGCTGTGCTTAGAGCCGGGTTGCTTGAAACATTTCACCAATTCCGAGTGCCTTAAGGCTCATGTTAAGTCCTGCCATCAATATGTAACCTGTGACACTTGTGGGACTAAGCAACTGAAGAAGAACATGAAAAGGCATCTCCGTACACACGAAACCGGCACTTCATCAGAACCCTTTAAATGTGAACACAAGGATTGTGACTGCACATTCTCAACTAAATCTAATCTTCAAAAGCATGAGAAGGCAGTACACTTTGAAGTAAGGTCTTTTGTGTGTGGATTTCGTAACTGTGGCATGAGATTTGCTTACAAACACGTGAAAGACAATCATGAAAAGACGGCAAAACATCTTTTTACCCTTGGTGACTTTGAAGAAGCTGATGAAGAATTCAGGTCAAGGCCAAGGGGAGGGGTGAAGAGAAAATGTCCTACAGTAGATATGTTGATTAGGAAAGGAGTTACTCCACCTGGTGAATTGGAGAACTTGTTGTTTAAGCAGGTTGTGAGTAAGATGGATCATACTCCTCTCTAG | 1227 | 0.4075 | MEEAMLCDELPKFSDIRRYFCPYCAISRSKKTLITSHINSQHKEELEKAKVESQHEAEVDVKDNTCEECGANFKKHAYLLQHMQSHSLEESNVLDTKMIYIIMDIIVLGDLLRSFIKDMPRSRSIQNKRPYACTLEDCNASYRRKDHLNRHLLQHQGKNFKCPVENCKSDFSLQSNLKRHLGEMHDENSTPARNGENQKRFVCPETGCGKVFRYASRLQKHEDSHVKLETVDVLCLEPGCLKHFTNSECLKAHVKSCHQYVTCDTCGTKQLKKNMKRHLRTHETGTSSEPFKCEHKDCDCTFSTKSNLQKHEKAVHFEVRSFVCGFRNCGMRFAYKHVKDNHEKTAKHLFTLGDFEEADEEFRSRPRGGVKRKCPTVDMLIRKGVTPPGELENLLFKQVVSKMDHTPL | 408 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa6g02336 | 408 | SUPERFAMILY | beta-beta-alpha zinc fingers | 158 | 186 | IPR036236 | - | |
| Vifa6g02336 | 408 | SMART | c2h2final6 | 322 | 348 | IPR013087 | - | |
| Vifa6g02336 | 408 | SMART | c2h2final6 | 291 | 316 | IPR013087 | - | |
| Vifa6g02336 | 408 | SMART | c2h2final6 | 160 | 185 | IPR013087 | - | |
| Vifa6g02336 | 408 | SMART | c2h2final6 | 64 | 86 | IPR013087 | - | |
| Vifa6g02336 | 408 | SMART | c2h2final6 | 131 | 155 | IPR013087 | - | |
| Vifa6g02336 | 408 | SMART | c2h2final6 | 233 | 258 | IPR013087 | - | |
| Vifa6g02336 | 408 | SMART | c2h2final6 | 261 | 282 | IPR013087 | - | |
| Vifa6g02336 | 408 | SMART | c2h2final6 | 201 | 225 | IPR013087 | - | |
| Vifa6g02336 | 408 | SMART | c2h2final6 | 19 | 42 | IPR013087 | - | |
| Vifa6g02336 | 408 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 64 | 91 | IPR013087 | - | |
| Vifa6g02336 | 408 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 162 | 185 | IPR013087 | - | |
| Vifa6g02336 | 408 | SUPERFAMILY | beta-beta-alpha zinc fingers | 197 | 227 | IPR036236 | - | |
| Vifa6g02336 | 408 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 201 | 230 | IPR013087 | - | |
| Vifa6g02336 | 408 | Gene3D | Classic Zinc Finger | 8 | 93 | - | - | |
| Vifa6g02336 | 408 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 133 | 155 | IPR013087 | - | |
| Vifa6g02336 | 408 | SUPERFAMILY | beta-beta-alpha zinc fingers | 272 | 330 | IPR036236 | - | |
| Vifa6g02336 | 408 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 293 | 316 | IPR013087 | - | |
| Vifa6g02336 | 408 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 160 | 190 | IPR013087 | - | |
| Vifa6g02336 | 408 | SUPERFAMILY | beta-beta-alpha zinc fingers | 64 | 155 | IPR036236 | - | |
| Vifa6g02336 | 408 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 235 | 258 | IPR013087 | - | |
| Vifa6g02336 | 408 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 203 | 225 | IPR013087 | - | |
| Vifa6g02336 | 408 | Gene3D | Classic Zinc Finger | 198 | 225 | - | - | |
| Vifa6g02336 | 408 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 291 | 321 | IPR013087 | - | |
| Vifa6g02336 | 408 | Gene3D | Classic Zinc Finger | 156 | 197 | - | - | |
| Vifa6g02336 | 408 | Gene3D | Classic Zinc Finger | 264 | 321 | - | - | |
| Vifa6g02336 | 408 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 324 | 348 | IPR013087 | - | |
| Vifa6g02336 | 408 | Pfam | Zinc finger, C2H2 type | 131 | 155 | IPR013087 | - | |
| Vifa6g02336 | 408 | Pfam | Zinc finger, C2H2 type | 201 | 225 | IPR013087 | - | |
| Vifa6g02336 | 408 | Pfam | Zinc finger, C2H2 type | 291 | 316 | IPR013087 | - | |
| Vifa6g02336 | 408 | PANTHER | ZINC FINGER PROTEIN | 11 | 393 | - | - | |
| Vifa6g02336 | 408 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 66 | 86 | IPR013087 | - | |
| Vifa6g02336 | 408 | Gene3D | Classic Zinc Finger | 121 | 155 | - | - | |
| Vifa6g02336 | 408 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 131 | 160 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa6g02336 | Vifa-Chr6 | 811807197 | 811809183 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa6g02336 | 131 | 351 | C2H2 Transcription Factor Family | AT1G72050 | 44.856 | 9.48e-66 | 211 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Vifa6g02336 | zf-C2H2 | 0.0012 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa6g02336 | K09191 | - | gmx:100801812 | 550.821 |