Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02333 ATGGATAGGGATCTATTGATATTGATATTAGGAATATGCATAGGCTTCGTAATTGGAGCTGGTTTGGGATTTTTAATTTTAGTCCTCTTCATATGTGGAAGGAAGTGTGTAGAGGTGGAAAAGAGCAGTCCTCAGAGAACTGAGGCCGTTACTGGCCATGTCAAAAGGGTTGGTTCCAGCATATCATTATCAGACTCCAATGCAGCTTTGGAGTCACCAAGAGCATCGGAATGGAGTAACACAAATTTTTGGTTAGAAGGACTTAGGAGGAAGAATTCAGTCTCAGCATGTGGAATTCCCAAGTATTCTTACAAAGATATAGAAAAGGCTACTTCTAATTTCACAACGATCATAGGCCATGGAGCATTTGGTTCTGTTTACAAAGCACAAATGCCTACAGGTGAGACGGTTGCAGTTAAAGTTCTTGGTGCTAATTCAAGACAAGGAGAACAAGAATTTTTAACTGAGCAGGTTCTATTACTTGGAAGATTACATCACAAAAACCTTGTGGCTTTGGTGGGATATGCTGCGGAAAGAGGACAACATATGCTTCTTTACATTTACATGAGCAATGGCAGTCTTGCTTCTCATTTATATGGAAAAGATCATGAGCCATTAAGCTGGGATTTGAGACTTAGCATAGCACTAGATGTTGCAAGGGTGCTGGAATATCTACATTATGGGGCTGATCCACCTATTGTGCACCGTGACATCAAGTCTTCCAACATTCTATTGGACCAGTTTATGAAAGCCAAGGTCACTGACTTTGGGCTTTCCAGACCAGAGATGATTAAACCGCGTACGTCCAATATCAGAGGAACTTTTGGATATCTTGATCCTGAGTATATATCTACAAGTACCTTCACTAAGAAAAGCGATGTTTATAGTTTTGGTGTGCTACTTTTCGAGCTTATTACTGGAAGGAATCCACAGCAGGGGCTCATGGAATACGTAAAACTAGCTGCCATGGAAAGTGAGGGGAAGATTGGATGGGAAGAAATTGTGGATCCGCAACTGAATGGAAACTATGATGTAAACAAGCTTAACGATATGGCTTCACTTGCATTCAAATGTGTCAATGGAGTTTCCAAAACTAGACCTTCAACGAGGAACGCTGTTCAAGCATTATCTAAGCTTTATAAGAAGCCTAAAAGAAATCCTAGCCGGGCATCTTCTATTGCATTAAGCGAAGTGTCTGTCGAAGTGGAACAGCCAGGAAGTCGTGACTTTTCATCTATTGAGGGTTCCCAGGAGCTGCGCAGATTGCACAGCCGATAA 1278 0.4147 MDRDLLILILGICIGFVIGAGLGFLILVLFICGRKCVEVEKSSPQRTEAVTGHVKRVGSSISLSDSNAALESPRASEWSNTNFWLEGLRRKNSVSACGIPKYSYKDIEKATSNFTTIIGHGAFGSVYKAQMPTGETVAVKVLGANSRQGEQEFLTEQVLLLGRLHHKNLVALVGYAAERGQHMLLYIYMSNGSLASHLYGKDHEPLSWDLRLSIALDVARVLEYLHYGADPPIVHRDIKSSNILLDQFMKAKVTDFGLSRPEMIKPRTSNIRGTFGYLDPEYISTSTFTKKSDVYSFGVLLFELITGRNPQQGLMEYVKLAAMESEGKIGWEEIVDPQLNGNYDVNKLNDMASLAFKCVNGVSKTRPSTRNAVQALSKLYKKPKRNPSRASSIALSEVSVEVEQPGSRDFSSIEGSQELRRLHSR 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02333 425 Gene3D Transferase(Phosphotransferase) domain 1 189 399 - -
Vifa6g02333 425 SMART serkin_6 112 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02333 425 Pfam Protein tyrosine and serine/threonine kinase 114 329 IPR001245 GO:0004672|GO:0006468
Vifa6g02333 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Vifa6g02333 425 Gene3D Phosphorylase Kinase; domain 1 80 188 - -
Vifa6g02333 425 ProSiteProfiles Protein kinase domain profile. 112 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02333 425 ProSitePatterns Protein kinases ATP-binding region signature. 118 140 IPR017441 GO:0005524
Vifa6g02333 425 SUPERFAMILY Protein kinase-like (PK-like) 99 391 IPR011009 -
Vifa6g02333 425 MobiDBLite consensus disorder prediction 406 425 - -
Vifa6g02333 425 FunFam calcium/calmodulin-regulated receptor-like kinase 1 189 397 - -
Vifa6g02333 425 PANTHER OS01G0750732 PROTEIN 30 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02333 Vifa-Chr6 810588471 810590796 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02333 98 381 Receptor kinase-like Gene Family AT3G19300 43.836 4.18e-75 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Vifa6g02333 PK_Tyr_Ser-Thr 5.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02333 - - gmx:100816549 595.504