Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02332 ATGGATAGGGATCTATTGATATTGATATTAGGAATATGCATAGGCTTCGTAATTGGAGCTGGTTTGGGATTTTTAATTTTAGTCCTCTTCATATGTGGAAGGAAGTGTGTAGAGGTGGAAAAGAGCAGTCCTCAGAGAACTGAGGCCGTTACTGGCCATGTCAAAAGGGTTGGTTCCAGCATATCATTATCAGACTCCAATGCAGCTTTGGAGTCACCAAGAGCATCGGAATGGAGTAACACAAATTTTTGGTTAGAAGGACTTAGGAGGAAGAATTCAGTCTCAGCATGTGGAATTCCCAAGTATTCTTACAAAGATATAGAAAAGGCTACTTCTAATTTCACAACGATCATAGGCCATGGAGCATTTGGTTCTGTTTACAAAGCACAAATGCCTACAGGTGAGACGGTTGCAGTTAAAGTTCTTGGTGCTAATTCAAGACAAGGAGAACAAGAATTTTTAACTGAGGTTCTATTACTTGGAAGATTACATCACAAAAACCTTGTGGCTTTGGTGGGATATGCTGCGGAAAGAGGACAACATATGCTTCTTTACATTTACATGAGCAATGGCAGTCTTGCTTCTCATTTATATGGAAAAGATCATGAGCCATTAAGCTGGGATTTGAGACTTAGCATAGCACTAGATGTTGCAAGGGTGCTGGAATATCTACATTATGGGGCTGATCCACCTATTGTGCACCGTGACATCAAGTCTTCCAACATTCTATTGGACCAGTTTATGAAAGCCAAGGTCACTGACTTTGGGCTTTCCAGACCAGAGATGATTAAACCGCGTACGTCCAATATCAGAGGAACTTTTGGATATCTTGATCCTGAGTATATATCTACAAGTACCTTCACTAAGAAAAGCGATGTTTATAGTTTTGGTGTGCTACTTTTCGAGCTTATTACTGGAAGGAATCCACAGCAGGGGCTCATGGAATACGTAAAACTAGCTGCCATGGAAAGTGAGGGGAAGATTGGATGGGAAGAAATTGTGGATCCGCAACTGAATGGAAACTATGATGTAAACAAGCTTAACGATATGGCTTCACTTGCATTCAAATGTGTCAATGGAGTTTCCAAAACTAGACCTTCAACGAGGAACGCTGTTCAAGCATTATCTAAGCTTTATAAGAAGCCTAAAAGAAATCCTAGCCGGGCATCTTCTATTGCATTAAGCGAAGTGTCTGTCGAAGTGGAACAGCCAGGAAGTCGTGACTTTTCATCTATTGAGGGTTCCCAGGAGCTGCGCAGATTGCACAGCCGATAA 1275 0.4141 MDRDLLILILGICIGFVIGAGLGFLILVLFICGRKCVEVEKSSPQRTEAVTGHVKRVGSSISLSDSNAALESPRASEWSNTNFWLEGLRRKNSVSACGIPKYSYKDIEKATSNFTTIIGHGAFGSVYKAQMPTGETVAVKVLGANSRQGEQEFLTEVLLLGRLHHKNLVALVGYAAERGQHMLLYIYMSNGSLASHLYGKDHEPLSWDLRLSIALDVARVLEYLHYGADPPIVHRDIKSSNILLDQFMKAKVTDFGLSRPEMIKPRTSNIRGTFGYLDPEYISTSTFTKKSDVYSFGVLLFELITGRNPQQGLMEYVKLAAMESEGKIGWEEIVDPQLNGNYDVNKLNDMASLAFKCVNGVSKTRPSTRNAVQALSKLYKKPKRNPSRASSIALSEVSVEVEQPGSRDFSSIEGSQELRRLHSR 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02332 424 Gene3D Phosphorylase Kinase; domain 1 80 187 - -
Vifa6g02332 424 FunFam calcium/calmodulin-regulated receptor-like kinase 1 188 396 - -
Vifa6g02332 424 SMART serkin_6 112 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02332 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Vifa6g02332 424 SUPERFAMILY Protein kinase-like (PK-like) 99 390 IPR011009 -
Vifa6g02332 424 PANTHER OS01G0750732 PROTEIN 30 391 - -
Vifa6g02332 424 MobiDBLite consensus disorder prediction 405 424 - -
Vifa6g02332 424 CDD STKc_IRAK 118 378 - -
Vifa6g02332 424 ProSitePatterns Protein kinases ATP-binding region signature. 118 140 IPR017441 GO:0005524
Vifa6g02332 424 Gene3D Transferase(Phosphotransferase) domain 1 188 398 - -
Vifa6g02332 424 Pfam Protein tyrosine and serine/threonine kinase 114 328 IPR001245 GO:0004672|GO:0006468
Vifa6g02332 424 ProSiteProfiles Protein kinase domain profile. 112 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02332 Vifa-Chr6 810588471 810590796 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02332 98 375 Receptor kinase-like Gene Family AT3G19300 43.706 6.70e-77 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Vifa6g02332 PK_Tyr_Ser-Thr 7.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02332 - - gmx:100816549 600.127