Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02331 ATGGATAGGGATCTATTGATATTGATATTAGGAATATGCATAGGCTTCGTAATTGGAGCTGGTTTGGGATTTTTAATTTTAGTCCTCTTCATATGTGGAAGGAAGTGTGTAGAGGTGGAAAAGAGCAGTCCTCAGAGAACTGAGGCCGTTACTGGCCATGTCAAAAGGGTTGGTTCCAGCATATCATTATCAGACTCCAATGCAGCTTTGGAGTCACCAAGAGCATCGGAATGGAGTAACACAAATTTTTGGTTAGAAGGACTTAGGAGGAAGAATTCAGTCTCAGCATGTGGAATTCCCAAGTATTCTTACAAAGATATAGAAAAGGCTACTTCTAATTTCACAACGATCATAGGCCATGGAGCATTTGGTTCTGTTTACAAAGCACAAATGCCTACAGGTGAGACGGTTGCAGTTAAAGTTCTTGGTGCTAATTCAAGACAAGGAGAACAAGAATTTTTAACTGAGGTTCTATTACTTGGAAGATTACATCACAAAAACCTTGTGGCTTTGGTGGGATATGCTGCGGAAAGAGGACAACATATGCTTCTTTACATTTACATGAGCAATGGCAGTCTTGCTTCTCATTTATATGGTTGTGTTGATGATTCAGGAAAAGATCATGAGCCATTAAGCTGGGATTTGAGACTTAGCATAGCACTAGATGTTGCAAGGGTGCTGGAATATCTACATTATGGGGCTGATCCACCTATTGTGCACCGTGACATCAAGTCTTCCAACATTCTATTGGACCAGTTTATGAAAGCCAAGGTCACTGACTTTGGGCTTTCCAGACCAGAGATGATTAAACCGCGTACGTCCAATATCAGAGGAACTTTTGGATATCTTGATCCTGAGTATATATCTACAAGTACCTTCACTAAGAAAAGCGATGTTTATAGTTTTGGTGTGCTACTTTTCGAGCTTATTACTGGAAGGAATCCACAGCAGGGGCTCATGGAATACGTAAAACTAGCTGCCATGGAAAGTGAGGGGAAGATTGGATGGGAAGAAATTGTGGATCCGCAACTGAATGGAAACTATGATGTAAACAAGCTTAACGATATGGCTTCACTTGCATTCAAATGTGTCAATGGAGTTTCCAAAACTAGACCTTCAACGAGGAACGCTGTTCAAGCATTATCTAAGCTTTATAAGAAGCCTAAAAGAAATCCTAGCCGGGCATCTTCTATTGCATTAAGCGAAGTGTCTGTCGAAGTGGAACAGCCAGGAAGTCGTGACTTTTCATCTATTGAGGGTTCCCAGGAGCTGCGCAGATTGCACAGCCGATAA 1293 0.4138 MDRDLLILILGICIGFVIGAGLGFLILVLFICGRKCVEVEKSSPQRTEAVTGHVKRVGSSISLSDSNAALESPRASEWSNTNFWLEGLRRKNSVSACGIPKYSYKDIEKATSNFTTIIGHGAFGSVYKAQMPTGETVAVKVLGANSRQGEQEFLTEVLLLGRLHHKNLVALVGYAAERGQHMLLYIYMSNGSLASHLYGCVDDSGKDHEPLSWDLRLSIALDVARVLEYLHYGADPPIVHRDIKSSNILLDQFMKAKVTDFGLSRPEMIKPRTSNIRGTFGYLDPEYISTSTFTKKSDVYSFGVLLFELITGRNPQQGLMEYVKLAAMESEGKIGWEEIVDPQLNGNYDVNKLNDMASLAFKCVNGVSKTRPSTRNAVQALSKLYKKPKRNPSRASSIALSEVSVEVEQPGSRDFSSIEGSQELRRLHSR 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02331 430 MobiDBLite consensus disorder prediction 411 430 - -
Vifa6g02331 430 FunFam calcium/calmodulin-regulated receptor-like kinase 1 188 402 - -
Vifa6g02331 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Vifa6g02331 430 SMART serkin_6 112 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02331 430 ProSitePatterns Protein kinases ATP-binding region signature. 118 140 IPR017441 GO:0005524
Vifa6g02331 430 Gene3D Transferase(Phosphotransferase) domain 1 188 404 - -
Vifa6g02331 430 SUPERFAMILY Protein kinase-like (PK-like) 99 396 IPR011009 -
Vifa6g02331 430 ProSiteProfiles Protein kinase domain profile. 112 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02331 430 CDD STKc_IRAK 118 384 - -
Vifa6g02331 430 PANTHER OS01G0750732 PROTEIN 30 397 - -
Vifa6g02331 430 Pfam Protein tyrosine and serine/threonine kinase 114 334 IPR001245 GO:0004672|GO:0006468
Vifa6g02331 430 Gene3D Phosphorylase Kinase; domain 1 80 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02331 Vifa-Chr6 810588471 810590796 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02331 98 381 Receptor kinase-like Gene Family AT3G19300 42.808 3.06e-74 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Vifa6g02331 PK_Tyr_Ser-Thr 9.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02331 - - gmx:100816549 601.668