Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02323 ATGGCTCCTCGGAATCAGAACAAGCCTCCGCGAAATCACCCCGATAAAACGGGTAGTGCTGAAGAAATTGAAGCTGAAAAGATGGGGAGAGCCAGGGCACCGTTAACTGCAGTGGTGAACAATGCCAGTACCAGCAACACAGAGGGAACGGAATCTAACACGATTGAGTTCACTAAAGAGGATATAGAGGCATTGCTTAATGAAAAGATGAAAAAGGGGATGAGTGCTCTTGATTACAAGAAAAAAATGGACCAGATGGTGGATCTTATTAAGCGGCTTAAGATTTGTGTTCGATGGTGCTTCAATGAAAATGAAAAACTGCATTCTGAAGTAGAGTCTGCTGTTAAAAAGTGTTGTGATACCGAGATTGAGATGGAGAACAAAAATGTGGAGCTGAGCGATACTATATCCAATATGAGAAACACAATTTCTTCCTTAGAAGAGATAAATGCAAAGGAAAAGTCAGAAAAGTTGGTAGCAATTGATGATAATATGAAACTACAGCAGTGCAATAGTAGTCTTCAATCAGATTTGAAATCAGCTAATGAGGCTTATAGACGACTTGACATGGAGAAAACAATCATTGTTGAGAGCCTTAATGCTACAAAAGATCTTAATAAGGAATTGCAGGATCGATTGAAATCTCTTAAAGATTCACATAGTGAAGCTATAAAGCATAAAGAAATGTTAGCAAACGAAGTTATATGTCTCCGTGAAGAACTAAAAAAAATAATGGATGATCGTGATCGCCTACAAGGACAACTAAATGCTGTAATGTTAGAACGGGAAAAATACATAAAATTTAAGTATGAAACATTTTCAAAATTGGATAAATTGGCAAGTAAAACAGAGGCACTAGAGAATACTTGTTCCTCTCAAAAGGAGAAAATTACTTTACTGGAGAAAAAGTTATGCGATGAAAGGGAGAAGTTAGAGATGGCTGATTTATCTGCTTTGAAAGCAAGAGAAATGTTTGAAGAGAAACAAAGTATCATTTGTGAACTACAAGATCAGTTGGCAGATAAAGAATTTCAAGTAGTTGAAGGGGAAAAGTTAAGAAAAAAACTGCACAACACTATATTGGAGCTGAAAGGAAATATTCGTGTGTTTTGTCGTGTGCGACCTTTACTACGAGAGGATCGTTCTGAAATGAATATGGTTGTTTCTTATCCAACGTCAATAGAAATGCTTGGCCGTGGCATTGAGTTAGGTCAAAATGGACAGAAACAACTTTTTACATTTGACAAGGTGTTTAATCATGATGCCTCTCAGCATGATGTTTTCACTGAAATATCACAACTGGTCCAAAGTGCGCTCGATGGCTACAAGGTATGCATTTTTGCTTATGGACAGACGGGTTCAGGAAAAACCTACACAATGGTGGGTAGACCCGACGCTCCAGAACTGAAAGGGATGATACCACTTTCCTTAGAACAGATATTTCAGACAAGTCAGTCTGTTAAAGACCAGGGCTGGAATTATAAAATGCAGGTATCAGTATTGGAAATATATAACGAGACCATCAAAGATTTGTTATCAAATCGGTCAAGTGGGTTTGACCAAACACGAGCAGAAAATAGTGTTCACGGAAAACAATATTCTATTAGACATGACAAAAATGGAAACACACATGTTTTGGACCTCACCATTGTCGATGTTTGTAGTGCTGCTGAAATTTCCTCCCTCTTGCAAAAGGCTGCCCAAATCAGGTCAATGGGAAGAACACAAATGAATGAACAGTCATCAAGAAGCCACTTTGTCGTTACTCTGCGCATATGTGGTATAAACGAGAACACTGAACAACAAGTACAAGGTGTCTTGAACCTCATCGATTTGGCTGGAAGTGAAAGACTTTCAAGAAGTGGGGCCACCGGAGACCGATTAAAGGAAGCTCAGGCTATCAACCAAAGTCTCTCCTGTTTGAGCAATGTCATATTTGCTTTGGCAAAGAAAGAAGATCATGTACCCTTTAGGGATTCAAAACTCACACATCTACTCCAGCCATCTCTTGAAGGGGATTCCAAAACTTTGATGTTTGTCAACATCTCACCGGATCAATCATCAATTGACGAGTCACTTTGCTCTCTTCGGTTTGCGGCTAGAGTGAATGCTGTGAAATTGGGGTCTCAAAGCGTAAGACCTAAACATACTCATGGTGTTTAG 2163 0.3907 MAPRNQNKPPRNHPDKTGSAEEIEAEKMGRARAPLTAVVNNASTSNTEGTESNTIEFTKEDIEALLNEKMKKGMSALDYKKKMDQMVDLIKRLKICVRWCFNENEKLHSEVESAVKKCCDTEIEMENKNVELSDTISNMRNTISSLEEINAKEKSEKLVAIDDNMKLQQCNSSLQSDLKSANEAYRRLDMEKTIIVESLNATKDLNKELQDRLKSLKDSHSEAIKHKEMLANEVICLREELKKIMDDRDRLQGQLNAVMLEREKYIKFKYETFSKLDKLASKTEALENTCSSQKEKITLLEKKLCDEREKLEMADLSALKAREMFEEKQSIICELQDQLADKEFQVVEGEKLRKKLHNTILELKGNIRVFCRVRPLLREDRSEMNMVVSYPTSIEMLGRGIELGQNGQKQLFTFDKVFNHDASQHDVFTEISQLVQSALDGYKVCIFAYGQTGSGKTYTMVGRPDAPELKGMIPLSLEQIFQTSQSVKDQGWNYKMQVSVLEIYNETIKDLLSNRSSGFDQTRAENSVHGKQYSIRHDKNGNTHVLDLTIVDVCSAAEISSLLQKAAQIRSMGRTQMNEQSSRSHFVVTLRICGINENTEQQVQGVLNLIDLAGSERLSRSGATGDRLKEAQAINQSLSCLSNVIFALAKKEDHVPFRDSKLTHLLQPSLEGDSKTLMFVNISPDQSSIDESLCSLRFAARVNAVKLGSQSVRPKHTHGV 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02323 720 Gene3D Kinesin motor domain 308 707 IPR036961 -
Vifa6g02323 720 SMART kinesin_4 364 713 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g02323 720 PRINTS Kinesin heavy chain signature 655 676 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g02323 720 PRINTS Kinesin heavy chain signature 606 624 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g02323 720 PRINTS Kinesin heavy chain signature 575 592 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g02323 720 PRINTS Kinesin heavy chain signature 441 462 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g02323 720 MobiDBLite consensus disorder prediction 1 32 - -
Vifa6g02323 720 FunFam Kinesin-like protein 312 707 - -
Vifa6g02323 720 Coils Coil 199 261 - -
Vifa6g02323 720 Coils Coil 171 191 - -
Vifa6g02323 720 MobiDBLite consensus disorder prediction 9 29 - -
Vifa6g02323 720 CDD KISc_C_terminal 364 707 - -
Vifa6g02323 720 ProSiteProfiles Kinesin motor domain profile. 366 705 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g02323 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 326 704 IPR027417 -
Vifa6g02323 720 ProSitePatterns Kinesin motor domain signature. 605 616 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vifa6g02323 720 Coils Coil 276 303 - -
Vifa6g02323 720 PANTHER KINESIN-LIKE PROTEIN KLP-3 75 710 IPR027640 GO:0003777|GO:0007018
Vifa6g02323 720 Pfam Kinesin motor domain 372 704 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g02323 720 Coils Coil 129 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02323 Vifa-Chr6 809364100 809369046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02323 274 705 Calmodulin-binding Proteins AT5G65930 36.952 4.63e-78 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02323 K10405 - gmx:100808278 866.685