Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02304 ATGGATATTCTTATTGTGAAAGCACAGAAGATTGAGACGCTTGAAGAATCATCTGAAACTCTCAGCCAGCTTCGGCAAGGCACAATAAAGGTGCTTTTTGTTTCACCCGAGCGGTTTTTGAATAAGGAGTTTCTGTCTGCTATCTCTGCTGGGTCAGCTGTCTCACTCGTTGTTATTGACGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCTTCATTCATGAGACTTAGAGCATCACTACTTCATAGAAGTCTTAATGTAGGTTCTGTTCTCGCAATGACAGCAACTGCTACAACCACAACCTTAGATGCCATCATGTCTGCCCTAGATATTCCTTTTACAAATCTTATTCAGAATGCACACTTAAGGGACAATTTGCGTTTGTCGGCGTCTTTGATAAAAAATAGAATGAAAGACCTACTGGTTCTGATAAAGTCTCCTCCTTTTGCGGATGTTAAAGGCATCATAGTATACTGCAAATTTCAGTCTGAAACTGATCAAATTAGCAGATACTTGAATGATAACAATATCTCGGCAAAGAGTTATCATAGTGGTATTTTTGCAAAGGAACGTGGCAACGTACAGGAGTTGTTTGCTTCAAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGTATGGGACTAGATAAAAGAGATGTTGGAGCAGTAATTCATTACAGTTTACCTGGAAATCTGGAAGAGTATGTACAGGAAATAGGACGTGCTGGGAGAGATGGAAGGTTGTCCTACTGTCACCTATTTTATGATGATGAGATGTATTTCAAACTCCGTAGTCTAATGTACAGTGAAGGAGTAGATGAATATGCAGTGAAGATTTTGTATTTGGTTCCATAA 867 0.3945 MDILIVKAQKIETLEESSETLSQLRQGTIKVLFVSPERFLNKEFLSAISAGSAVSLVVIDEAHCISEWSHNFRPSFMRLRASLLHRSLNVGSVLAMTATATTTTLDAIMSALDIPFTNLIQNAHLRDNLRLSASLIKNRMKDLLVLIKSPPFADVKGIIVYCKFQSETDQISRYLNDNNISAKSYHSGIFAKERGNVQELFASNKIRVVVATVAFGMGLDKRDVGAVIHYSLPGNLEEYVQEIGRAGRDGRLSYCHLFYDDEMYFKLRSLMYSEGVDEYAVKILYLVP 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02304 288 Pfam Helicase conserved C-terminal domain 156 249 IPR001650 -
Vifa6g02304 288 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 55 64 IPR002464 -
Vifa6g02304 288 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 139 287 IPR001650 -
Vifa6g02304 288 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 262 IPR027417 -
Vifa6g02304 288 NCBIfam RecQ family ATP-dependent DNA helicase 12 275 IPR004589 GO:0004386|GO:0006310
Vifa6g02304 288 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 118 IPR014001 -
Vifa6g02304 288 Gene3D - 5 116 IPR027417 -
Vifa6g02304 288 SMART helicmild6 169 250 IPR001650 -
Vifa6g02304 288 Pfam DEAD/DEAH box helicase 15 104 IPR011545 GO:0003676|GO:0005524
Vifa6g02304 288 PANTHER DNA HELICASE RECQ FAMILY MEMBER 14 282 - -
Vifa6g02304 288 Gene3D - 126 285 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02304 Vifa-Chr6 804741880 804745178 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02304 159 287 Eukaryotic Initiation Factors Gene Family AT3G19760 30.534 1.29e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02304 K10730 - gmx:100811214 434.106