Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02303 ATGTTAAGCGGTGAAATTCCTAAAGAACTAGCCCAACTTACCAGGCTTAAAGAGATTTCTGTTGCTAACAATGATGGACTTTGTGGAGGGCCGGTCTTGAGACCCTGCTCCTTGACACATGACAAGCACGGAGATTTTCATCAATCATTTAAGGATGGTCTTATTGTTGGTTATGTTTTTTCAATCATTTTTTCTGTTATGATCAGTTGTATGTTCTACTCCAAATGTGCACATTGGCTGCATCAATTGAAGAAAAAGAAAAACAATCACATAAACAAAGTTGTAGAATTGGGAAAATACATTTGCTCCATCACCAACATGAGGAAGCAGATGGTAGTTAATCAGATACGTGAATTGTTACAAATGCGGTGGGCACACAAAGAAAGCAAAGAGATTGATGTACTATGTAAAAGATTGACCTCGACAATATGGCTGGAAGAACTACATGATGCAACCGATTGTTTCTCCGTGGACAATACCATTGGAGTAGGAAAGATGGGAATGATGTACGAAGGATTTATGCCTAATGGAAAGGAAAGGCTTTTAACATATGAATACATGTCAAATGGAAGGCTTTCCAAATGGTTGCATCCTTTGGAAAGTGAAATCATAAGATTGAAATGGCACGACAGAGTCAACATTGCACTTGGAATTGCTAGAGGATTATCATGGCTACATCATACATGGAAAACTTTTGATGAATTGTCTCATTCATATGACACTACTAATATATGTAGTAACCCTTTGAGTTTTTATAATATAATTGATAAATCTTTGACTGGTGAAGGACTTGACAATGAAGTTTGTACTCTTCTAAATATTGCTTGTGAGTGTGTCAAACCTTTACCGGACCAGAGACCAACAATGCTTGAAGTTTACAAAAGTATAAGTAAAGTAAGGAATGGACGAAATGGATATGGCGATGATTGTGACACATTAAAGGGATTAGAATGTACTTCTATTACTATGGATGAAATTATTGAGGTTTAG 990 0.3646 MLSGEIPKELAQLTRLKEISVANNDGLCGGPVLRPCSLTHDKHGDFHQSFKDGLIVGYVFSIIFSVMISCMFYSKCAHWLHQLKKKKNNHINKVVELGKYICSITNMRKQMVVNQIRELLQMRWAHKESKEIDVLCKRLTSTIWLEELHDATDCFSVDNTIGVGKMGMMYEGFMPNGKERLLTYEYMSNGRLSKWLHPLESEIIRLKWHDRVNIALGIARGLSWLHHTWKTFDELSHSYDTTNICSNPLSFYNIIDKSLTGEGLDNEVCTLLNIACECVKPLPDQRPTMLEVYKSISKVRNGRNGYGDDCDTLKGLECTSITMDEIIEV 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02303 329 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 179 228 - -
Vifa6g02303 329 Gene3D Phosphorylase Kinase; domain 1 114 190 - -
Vifa6g02303 329 SUPERFAMILY Protein kinase-like (PK-like) 146 296 IPR011009 -
Vifa6g02303 329 Gene3D Transferase(Phosphotransferase) domain 1 232 308 - -
Vifa6g02303 329 Gene3D Transferase(Phosphotransferase) domain 1 191 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02303 Vifa-Chr6 804464175 804465572 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02303 2 228 Receptor kinase-like Gene Family AT1G55610 26.241 2.81e-15 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vifa6g02303 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02303 - - psat:127106772 323.553