Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02293 ATGGAGAATATTTCATTCATCAGAGGGTTTCCTGATCAGGAAATAATGGAGGATCCTTCTCTGTGTCTTGATCAATGGCATTTAAACTCTATTGATGAGTCTAACACACTGCCAATAGCTGCTTCTTTCGGAGACACTTTGCAACAACATTCATATATTTATCCAAACTTCAACCTCAGAGCTTTGGTTGAAACTGATCAGACACCAGAGACTCAATTTGTTTCGTACCAAAACCTTCTTTCGTATGTCGATTCAAATCATTTTAATCAGTTGGGATTGGTGAAGCCTAAGGACGAGATGGTTTGTCCTCAACACAATAACACAACTTCAGACGCGGTCTCTCGAGGAATCATGGAGGCTCAAAGGATATCGACACGTCCTAAAGTCGCTCTACCTCAAGACCATATAATAGCTGAAAGAAAGCGGCGAGAGAAGCTCAGCCAGCGCTTCATTGCTCTTTCCGCCCTTGTTCCCGGGCTACAAAAGATGGACAAAGTTACTGTTCTTGGAGATGCTATCAAGTACTTGAAGAAACTGCAAGAGAAGGTGAAGGCTCTTGAGGAGGAACAGAACATGAAGAAAAACGTGGAATATGTGGTGGTTGTGAAGAAATCTCAACTATCGAATGACATTGAAAATTTTTCTGCAGAATCTGGAAGTCCCTTCAACGAGGAACTGCCAGAAATTGAAGCAAGGTTTTGTGATAGAAATGTACTCATAAGAATTCACTGTGAAAAAAGCAAAGGAGCTTTGGAAAAAACAATCCATGAAATTGAGAAACTTCATCTAAAAGTCATCAATAGCTGTGTCATGACATTCGGGAGCTGCGCACTTGATATAACAGTTATTGCTCAGATGGATATGGAATTCTGCGTGACAGTGAAAGATCTTGTGACAAACCTACGTTCAGCTTTTGCATCGTTCATCTGA 930 0.4086 MENISFIRGFPDQEIMEDPSLCLDQWHLNSIDESNTLPIAASFGDTLQQHSYIYPNFNLRALVETDQTPETQFVSYQNLLSYVDSNHFNQLGLVKPKDEMVCPQHNNTTSDAVSRGIMEAQRISTRPKVALPQDHIIAERKRREKLSQRFIALSALVPGLQKMDKVTVLGDAIKYLKKLQEKVKALEEEQNMKKNVEYVVVVKKSQLSNDIENFSAESGSPFNEELPEIEARFCDRNVLIRIHCEKSKGALEKTIHEIEKLHLKVINSCVMTFGSCALDITVIAQMDMEFCVTVKDLVTNLRSAFASFI 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02293 309 Coils Coil 169 196 - -
Vifa6g02293 309 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
Vifa6g02293 309 PANTHER BHLH TRANSCRIPTION FACTOR 63 306 - -
Vifa6g02293 309 Gene3D - 132 203 IPR036638 GO:0046983
Vifa6g02293 309 Pfam Helix-loop-helix DNA-binding domain 134 180 IPR011598 GO:0046983
Vifa6g02293 309 SMART finulus 136 185 IPR011598 GO:0046983
Vifa6g02293 309 CDD bHLH_AtNAI1_like 131 204 - -
Vifa6g02293 309 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 206 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02293 Vifa-Chr6 801318571 801319805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02293 92 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 51.802 2.38e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa6g02293 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02293 - - vun:114179595 375.941