Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02278 ATGGAGACCTATCAATATCCTCCGTCATATCCAGATTCCGGCCACTCGTCACCACGTTCAAGAGATATCGATTTCGACAATCCATCGTCATGGGAAGACCAGCAAAACTACAAAGCCAAGTTCATGTGCAGCTACGGCGGAAAGATCCAACCACGCAGCCACGACAACCAGCTTTCTTATATCGGCGGCGACACCAAAATATTAGCCGTCGACAGAAACATCAAGTTCCAAGCCTTCCTCTCCAAGCTCTCCACTCTCTGCGACGCTATTCCGCAAGAGATAAGTTTCAAGTACCAGCTTCCCGGTGAAGAACTTGACGCTCTTATCTCTGTCACAACAGAAGACGACCTCGAACACCTCATGCATGAGTACGATCGCCTCTATCGTCCTTCCTCAAAACCAGTTCGAATGAGGCTCTTCATATTCATCACTCCAAATTCTGCTCCACCGGTTCAACCTCCTTCCTATGCTGCTGTGAAATATCACGAGCCTGTGCCAGATCTTGTTGCGCAACAACCTGAGTATCCGCCACGTGGACTTGCGGATGATAGTGTTGAGATTCAGAGGCAGTTACAGCGTTTGCAGGTTTCTGAGAGTGAGCAGTCCTTGTATCGGAGAAGTGTAGATGGATTCACCGGTGGATATCCCGCTGCTGCTACTTCCGGAGGCGATTTTTACACGCACAAGATGCTGGAGAAAGTGGCTCCTTCGAATTTGCCAACTGCTGTTCATCAACCCCCGGGTTACTGGCCGGAAAAACAATTTTCCAGCGACGGTTTCCCGATGACAGGGATGAACACTTCCGGTGGAGGAGACCAGCATGTTTACATGATGCCGACACCGGGAACATTCTATCACGCGCCTCAGGTGATGCGTCCACCGGCGGCGCAGGTGACTCAGGGGTACTACGCAGTGCAGCGAATGTCTTCTGATGGATACCGGGAACAGCCGGTGTATGGTGGCGTTCAACATCAGAATGTCGCGTTTTCGTCTGCGGGTCAGGGGAATTTAGCACCGGCTCAGCAGGTCAAACCTTCTGGTTATGCGGAAGGATATGGCTTAGTTAGGCCAGCTGGAGTAGCGGAAAATGCGGGAGCTGCTGGGTATGCGCAAGTGGCGTATGATAGTGCAAGTGGGAGACATATTTACTATACTGCGCCTGGAGGGATGGTTCATGCGCCGCAGTATCAAGGGGTTGCTCCGGTATTCAGCAATGACATGAGACCGGCTGGGGCTCCTGTGGGCCAGGATACTAAAGGTGTAAACAAGGGCCAACAAGGATAA 1284 0.5156 METYQYPPSYPDSGHSSPRSRDIDFDNPSSWEDQQNYKAKFMCSYGGKIQPRSHDNQLSYIGGDTKILAVDRNIKFQAFLSKLSTLCDAIPQEISFKYQLPGEELDALISVTTEDDLEHLMHEYDRLYRPSSKPVRMRLFIFITPNSAPPVQPPSYAAVKYHEPVPDLVAQQPEYPPRGLADDSVEIQRQLQRLQVSESEQSLYRRSVDGFTGGYPAAATSGGDFYTHKMLEKVAPSNLPTAVHQPPGYWPEKQFSSDGFPMTGMNTSGGGDQHVYMMPTPGTFYHAPQVMRPPAAQVTQGYYAVQRMSSDGYREQPVYGGVQHQNVAFSSAGQGNLAPAQQVKPSGYAEGYGLVRPAGVAENAGAAGYAQVAYDSASGRHIYYTAPGGMVHAPQYQGVAPVFSNDMRPAGAPVGQDTKGVNKGQQG 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02278 427 Pfam PB1 domain 54 141 IPR000270 GO:0005515
Vifa6g02278 427 SUPERFAMILY CAD & PB1 domains 54 147 - -
Vifa6g02278 427 SMART PB1_new 53 144 IPR000270 GO:0005515
Vifa6g02278 427 MobiDBLite consensus disorder prediction 1 31 - -
Vifa6g02278 427 Gene3D - 59 143 - -
Vifa6g02278 427 MobiDBLite consensus disorder prediction 1 16 - -
Vifa6g02278 427 CDD PB1_UP2 42 142 - -
Vifa6g02278 427 MobiDBLite consensus disorder prediction 408 427 - -
Vifa6g02278 427 PANTHER OS05G0427100 PROTEIN-RELATED 10 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02278 Vifa-Chr6 798009940 798011307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02278 37 145 MAP Kinase Kinase Kinase AT5G57610 42.202 1.47e-23 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02278 - - psat:127106335 817.764