Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02277 ATGGATCTTGGTATACAATTATTGGTGAGTAATGAGTACAGCTATTCTGTAATCTGGAATTTTGGATTAGCAATATTGTATCTTGTGCGGGATTTCGTGAATGGGCATCTTTTCTTTCAGCTTTATCACCAAGGCCTTTTCAGAGAGGATCTTGCACACGTATATGCTTCCAAGATTGTTTATGCAGTTTCCCATTTCCACTCAAAGGGAATAATGCACAGGGATCTAAAACCTGAAAATATCCTTATGAATGTCGATGGCCGTTACACGGCACCTGAAATTATTATTGGCAAGGGCCATGATAAGGCTGCTGATTGGTGGAGCGTAGGTGTCTTACTGTTTGAGATGCTCACGGGGAAGAAACTGGCTGGCCATCTTCTGGTGGAGCAAATGAACCCGATGCTACTGCAGAAAATGCTAAGACCTACAATATACGGATTGTTTAATGAAGATAAGAGGAATGGACCTATATCAAAAAAAAATTGGGGCATTGTGTTTACTAATGGAAGTGCTGCTTATCCTTTGAGCTATGGTGGTGCTACTGTTCAGATAACTGGAACTGGAAACTCATCGGCAGTATTTTGTGTCGCTAAAGATGGTGCATACAATGATAAAGGCAAGATGGCCTGA 630 0.4127 MDLGIQLLVSNEYSYSVIWNFGLAILYLVRDFVNGHLFFQLYHQGLFREDLAHVYASKIVYAVSHFHSKGIMHRDLKPENILMNVDGRYTAPEIIIGKGHDKAADWWSVGVLLFEMLTGKKLAGHLLVEQMNPMLLQKMLRPTIYGLFNEDKRNGPISKKNWGIVFTNGSAAYPLSYGGATVQITGTGNSSAVFCVAKDGAYNDKGKMA 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02277 209 PANTHER RIBOSOMAL PROTEIN S6 KINASE 26 87 - -
Vifa6g02277 209 ProSitePatterns Serine/Threonine protein kinases active-site signature. 71 83 IPR008271 GO:0004672|GO:0006468
Vifa6g02277 209 ProSiteProfiles Protein kinase domain profile. 1 209 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02277 209 Gene3D Transferase(Phosphotransferase) domain 1 33 87 - -
Vifa6g02277 209 SUPERFAMILY Protein kinase-like (PK-like) 23 127 IPR011009 -
Vifa6g02277 209 Gene3D Transferase(Phosphotransferase) domain 1 88 159 - -
Vifa6g02277 209 Pfam Protein kinase domain 86 125 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02277 209 Pfam Protein kinase domain 26 85 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02277 209 SMART serkin_6 1 158 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02277 Vifa-Chr6 797572889 797574770 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02277 7 120 AGC Kinase Gene Family AT3G08720 58.156 1.36e-46 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Vifa6g02277 Pkinase 1.8e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02277 K04688 - ath:AT3G08720 154.066