Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02264 ATGGGGAGAGGAAAGATTCTGATTAGAAAGATTGAGAATTTGACCAACAGGCAAGTGACTTTCTCAAAACGAAGAAAAGGGTTGAAGAAGAAAGCTAAAGAACTTTCCATTCTTTGTGATGCACAAGTTGGATTGATTTTGTTCTCCTCTACTCATAAGCTTTATCACTATGCAAGCTCCAGCATGGAATCTATTATCGATCGGTATAATAAGTTAACTAAGGATCACCATCGGGCAATAGATACTACTTTGGACGTCAAGTTTTGGCAAAGAGAAGTAGTAAGCTTGAGGCACCAATTGCAGCACTTGAATGATAGCCAAAGGCAATTGATGGGCCAAGAGCTATCAGGTTTGGATTTTACTGAGCTGCAGCATCTGGAAATTCAAATGGAGATGAGTTTGAAAAACATTCGAACGAGAAAGGGTCAAATTTTTAGTGATGAGATCAATGAGTTACACAAAAAGGGAAGCCTTAGTAGTAAAGAAAATGAAGAACTTCATAAGAAGATAAACCAAATTGGCCAAGAAAACGCAGAACTAGAGAAGGTTATTGGAACAAAGCGCGGCGTATATGCAATATCCAATGCTTCTTCACACAGTAGTATCAGAATCAGCTATGGATATGATATACATGATGAACAAATCAGTCTCCAGCTAAGGCAGCCACAACCACAATAG 678 0.3864 MGRGKILIRKIENLTNRQVTFSKRRKGLKKKAKELSILCDAQVGLILFSSTHKLYHYASSSMESIIDRYNKLTKDHHRAIDTTLDVKFWQREVVSLRHQLQHLNDSQRQLMGQELSGLDFTELQHLEIQMEMSLKNIRTRKGQIFSDEINELHKKGSLSSKENEELHKKINQIGQENAELEKVIGTKRGVYAISNASSHSSIRISYGYDIHDEQISLQLRQPQPQ 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02264 225 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Vifa6g02264 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vifa6g02264 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vifa6g02264 225 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa6g02264 225 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Vifa6g02264 225 Coils Coil 163 183 - -
Vifa6g02264 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Vifa6g02264 225 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa6g02264 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vifa6g02264 225 Coils Coil 86 106 - -
Vifa6g02264 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa6g02264 225 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Vifa6g02264 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa6g02264 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa6g02264 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02264 Vifa-Chr6 794211899 794234119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02264 1 223 MADS-box Gene Family AT2G22630 50.000 1.39e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vifa6g02264 K-box 1.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02264 K09264 - zju:112492935 251.136